Browse Element(s) Details


Os.12186.2.S1_x_at

Description gb:NM_187532.1
DB_XREF= gi:34902149
GEN=OSJNBb0014I10.3
TID=Os.12186.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12186 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative r40c1 protein - rice (OSJNBb0014I10.3), mRNA.
PROD=Putative r40c1 protein - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2104011/11expressed protein
LOC_Os07g484602/11expressed protein
LOC_Os07g484901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21040Os.12186.2.S1_x_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.2.S1_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.1.S1_at10/113+11936096..11938398expressed protein
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21060Os.17286.1.S1_at11/113+11952807..11955207NAC domain transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12186.2.S1_x_at--1095--4951Chr03:11937590..11937614 (25 bp)
GCATCTTCTGCAAGGCCGACGAGGG
LOC_Os03g21040
Os.12186.2.S1_x_at--690--5771Chr03:11937573..11937597 (25 bp)
GACGAGGGCTTCAGCGTCACCGTCC
LOC_Os03g21040
Os.12186.2.S1_x_at--1008--6452Chr07:29003563..29003587 (25 bp)
GATCAAGGACATGAGGCACAGCAAC
LOC_Os07g48490
Os.12186.2.S1_x_at--68--4832Chr07:28992254..28992278 (25 bp)
GCATCAAGGACGAGGAAGGCTACCC
LOC_Os07g48460
Os.12186.2.S1_x_at--788--371Chr03:11937405..11937429 (25 bp)
ATCAAGCACTCCCAAGGCGAAGGCC
LOC_Os03g21040
Os.12186.2.S1_x_at--905--2931Chr03:11937283..11937416 (25 bp)
AAGGCGAAGGCCACCCTGTGAAGCT
LOC_Os03g21040
Os.12186.2.S1_x_at--616--5392Chr07:28991561..28991581 (21 bp)
GAAGCTGGTGCCGTACAACCCCGGA
LOC_Os07g48460
Os.12186.2.S1_x_at--585--9831Chr03:11937251..11937275 (25 bp)
TACAACCCCGGATACCAGGACGAGT
LOC_Os03g21040
Os.12186.2.S1_x_at--266--1291Chr03:11937052..11937076 (25 bp)
AGATCGTCCCCTGGTGTAAGCTGCC
LOC_Os03g21040
Os.12186.2.S1_x_at--394--7751Chr03:11937040..11937064 (25 bp)
GGTGTAAGCTGCCTCATCCCAACAT
LOC_Os03g21040
Os.12186.2.S1_x_at--605--2491Chr03:11937020..11937044 (25 bp)
AACATCGCTCGCTGCAACTTGTTTA
LOC_Os03g21040
Target Sequence 
GCATCTTCTGCAAGGCCGACGAGGGCTTCAGCGTCACCGTCCGCGGCGGCTCCGTCTGCCTCGCCCCCACCAACCCTCGC
GACGAGTACCAGCNCTGGATCAAGGACATGAGGCACAGCAACAGCATCAAGGACGAGGAAGGCTACCCCGCCTTCGCCCT
CGTNAACAGGGTCACCGGNCNNAGGCCATCAAGCACTCCCAAGGCGAAGGCCACCCTGTGAAGCTGGTGCCGTACAACCC
CGGATACCAGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGTCGGGCACGGCTTCCGCTGCATCCGCATGGTGAACA
ACATCTACCTCAACTTCGACGCCCTCCACGGCGACAAGGACCACGGCGGCGTCCGCGACGGCACCACCGTCGCGCTCTGG
AAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGATCGTCCCCTGGTGTAAGCTGCCTCATCCCAACATCGCTCGCTGCAA
CTTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12186.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis