Browse Element(s) Details


Os.50244.1.S1_x_at

Description gb:AK120305.1
DB_XREF= gi:37989928
TID=Os.50244.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052N11, full insert sequence.
FL= gb:AK120305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2105010/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21040Os.12186.2.S1_x_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.2.S1_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.1.S1_at10/113+11936096..11938398expressed protein
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21060Os.17286.1.S1_at11/113+11952807..11955207NAC domain transcription factor, putative, expressed
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50244.1.S1_x_at--620--9351Chr03:11941392..11941416 (25 bp)
TCGCAGGGCCGCATGGTGCAAGCGA
LOC_Os03g21050
Os.50244.1.S1_x_at--468--811Chr03:11941404..11941428 (25 bp)
ATGGTGCAAGCGACGGCGGTGTCAA
LOC_Os03g21050
Os.50244.1.S1_x_at--702--4551Chr03:11941454..11941477 (24 bp)
GCCCAGGGCGCAAGCGGTAGTTACT
LOC_Os03g21050
Os.50244.1.S1_x_at--704--1611Chr03:11941465..11941489 (25 bp)
AGCGGTAGTTACTGGCGGCGGCGGC
LOC_Os03g21050
Os.50244.1.S1_x_at--280--7751Chr03:11941500..11941524 (25 bp)
GGTGTCGGGATGCAAGCAGCGCTGT
LOC_Os03g21050
Os.50244.1.S1_x_at--810--9011Chr03:11941510..11941534 (25 bp)
TGCAAGCAGCGCTGTGGAGGAGAGC
LOC_Os03g21050
Os.50244.1.S1_x_at--1074--7213Chr03:11941544..11941568 (25 bp)
GTCGAGCGCCCTTGATCTGGTCGGC
LOC_Os03g21050
Os.50244.1.S1_x_at--821--9451Chr03:11941564..11941588 (25 bp)
TCGGCCGCCAGCTTCCGGAAGTGAA
LOC_Os03g21050
Os.50244.1.S1_x_at--435--4411Chr03:11941570..11941592 (23 bp)
GCCAGCTTCCGGAAGTGAACGGTCG
LOC_Os03g21050
Os.50244.1.S1_x_at--565--1231Chr03:11941573..11941592 (20 bp)
AGCTTCCGGAAGTGAACGGTCGCAC
LOC_Os03g21050
Os.50244.1.S1_x_at--637--3611NONE
CTTCCGGAAGTGAACGGTCGCACGG
NONE
Target Sequence 
TCGCAGGGCCGCATGGTGCAAGCGACGGCGGTGTCAAGGAGGGTGTCAGCGGCGCGTGGGGCCCAGGGCGCAAGCGGTAG
TTACTGGCGGCGGCGGCGCGGGAGCGGGGTGTCGGGATGCAAGCAGCGCTGTGGAGGAGAGCGTCGTCGGCGTCGAGCGC
CCTTGATCTGGTCGGCCGCCAGCTTCCGGAAGTGAACGGTCGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50244.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis