Browse Element(s) Details


Os.7235.1.S1_at

Description gb:AK065989.1
DB_XREF= gi:32976007
TID=Os.7235.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative NAM (no apical meristem) protein (OSJNBb0014I10.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046E14, full insert sequence.
FL= gb:AK065989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2103011/11GRAB2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21040Os.12186.2.S1_x_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.2.S1_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.1.S1_at10/113+11936096..11938398expressed protein
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7235.1.S1_at--1078--1831Chr03:11916830..11916854 (25 bp)
ACGACGGGATTCTGGGCCTCGACGA
LOC_Os03g21030
Os.7235.1.S1_at--737--8411Chr03:11916816..11916840 (25 bp)
GGCCTCGACGACTTCTGGAACTAAT
LOC_Os03g21030
Os.7235.1.S1_at--827--1771Chr03:11916760..11916784 (25 bp)
ACCGACCTTGCGCTACAGGATTTTG
LOC_Os03g21030
Os.7235.1.S1_at--34--3491Chr03:11916745..11916769 (25 bp)
CAGGATTTTGCTTCAGGCTGGTTGA
LOC_Os03g21030
Os.7235.1.S1_at--423--8271Chr03:11916666..11916690 (25 bp)
GGCAGTTTGTTGATGCATCCTTCTC
LOC_Os03g21030
Os.7235.1.S1_at--861--5291Chr03:11916626..11916650 (25 bp)
GAAGGCTTCTTCTCGGGATGGGTTC
LOC_Os03g21030
Os.7235.1.S1_at--1039--151Chr03:11916591..11916615 (25 bp)
ATTATTTATCATCCATCCAGACCTC
LOC_Os03g21030
Os.7235.1.S1_at--1115--3451Chr03:11916566..11916590 (25 bp)
CAGGGATTAGCTAGGACTCCTTGTT
LOC_Os03g21030
Os.7235.1.S1_at--1121--1011Chr03:11916523..11916547 (25 bp)
AGGTTTCTTCATGTCTTGATCTGAT
LOC_Os03g21030
Os.7235.1.S1_at--73--6911Chr03:11916468..11916492 (25 bp)
GTATCCTGATTGTGTCTAGTAGCAT
LOC_Os03g21030
Os.7235.1.S1_at--511--731Chr03:11916318..11916342 (25 bp)
ATGTACCATTAATTGCTTGAGCTAG
LOC_Os03g21030
Target Sequence 
ACGACGGGATTCTGGGCCTCGACGACTTCTGGAACTAATCCACNCCTGAATGATCCGGAGCTAGCTCCCTACCGACCTTG
CGCTACAGGATTTTGCTTCAGGCTGGTTGATTAATTACTTGATTTGATTAATTAACTTGGTGTTTCATGCTTGGGTTAAT
TAGTGGCAGTTTGTTGATGCATCCTTCTCTTCCTCCTTCCGATCGAAGGCTTCTTCTCGGGATGGGTTCGGATGATCAGA
TTATTTATCATCCATCCAGACCTCCAGGGATTAGCTAGGACTCCTTGTTAATTAATCCTAGCTAGCTAGGTTTCTTCATG
TCTTGATCTGATGTAAATACAATTACTACTACTAAGTACGGGGTATCCTGATTGTGTCTAGTAGCATGATGATTGATTAT
ACTACAATCAATGGGGTGTAGATTAGGGGTGGATTGATCATTTACGAATTGATTAATTTGGCATTTGATGAGCCAGCTAG
CTGCTAGCTTTATAAAGCTTTATACTATGTACATGTACCATTAATTGCTTGAGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis