Browse Element(s) Details


Os.55179.1.S1_at

Description gb:AK107632.1
DB_XREF= gi:32992841
TID=Os.55179.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E05, full insert sequence.
FL= gb:AK107632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2102010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55179.1.S1_at--1114--4871Chr03:11904969..11904993 (25 bp)
GCTTTTGTGACATTTCCATCGGTTG
LOC_Os03g21020
Os.55179.1.S1_at--723--491Chr03:11904952..11904976 (25 bp)
ATCGGTTGAACTTGCTCAACGCGCA
LOC_Os03g21020
Os.55179.1.S1_at--307--2611NONE
AACGCGCACTGAATCTTGTACATGG
NONE
Os.55179.1.S1_at--104--1211Chr03:11904215..11904239 (25 bp)
AGTTTGGCAGAAACCCTGCGGCTAA
LOC_Os03g21020
Os.55179.1.S1_at--1104--3791Chr03:11904200..11904224 (25 bp)
CTGCGGCTAACAAATCTTCCTAGGA
LOC_Os03g21020
Os.55179.1.S1_at--327--991Chr03:11904179..11904203 (25 bp)
AGGAGGGTTGCATTCTTTCAGATAC
LOC_Os03g21020
Os.55179.1.S1_at--117--8171Chr03:11903553..11903577 (25 bp)
GGAACTGGGCGCATGTACACTGTAC
LOC_Os03g21020
Os.55179.1.S1_at--1084--10831Chr03:11903508..11903532 (25 bp)
TTGTGGGCTGAAGAGCATCCTCGTT
LOC_Os03g21020
Os.55179.1.S1_at--640--5932Chr02:34944628..34944647 (20 bp)
GAGCATCCTCGTTCAATATGGTGCA
NONE
Os.55179.1.S1_at--745--4671Chr03:11903446..11903470 (25 bp)
GCGGTTCTGTTCTGCGGTCTGAAAA
LOC_Os03g21020
Os.55179.1.S1_at--520--1251Chr03:11903335..11903359 (25 bp)
AGATTCCTGCGCGAGGTGTGAACTA
LOC_Os03g21020
Target Sequence 
GCTTTTGTGACATTTCCATCGGTTGAACTTGCTCAACGCGCACTGAATCTTGTACATGGTTTTGTGTTCAAAGGCAAACC
AATGATTATACAGTTTGGCAGAAACCCTGCGGCTAACAAATCTTCCTAGGAGGGTTGCATTCTTTCAGATACTGAATGCA
CTTTTAAGTCAATAGGGACTAGCAAATGGAGACCAAAACTCCTGAGTATTTCTTCAGGAACTGGGCGCATGTACACTGTA
CAGAAGAGTGAAGATTGTAGATTGTGGGCTGAAGAGCATCCTCGTTCAATATGGTGCAAGATAAACTTGTACAGAACCTT
GTAGCGGTTCTGTTCTGCGGTCTGAAAATGTTGGGTTTGGAAACAATTGAGGCCTATGTAATGTGGCATTTATTTACTGA
ATTCGGTGGGAACTGAACTGATTCATACATTAAGAGATTCCTGCGCGAGGTGTGAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis