Browse Element(s) Details


OsAffx.27944.1.S1_x_at

Description tigr:9631.m02095
TID=OsAffx.27944.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g210109/11hypothetical protein
LOC_Os12g088708/11hypothetical protein
LOC_Os06g174306/11hypothetical protein
LOC_Os06g349403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27944.1.S1_x_at--971--852Chr03:11902556..11902580 (25 bp)
ATGGCTGTTGGTGATTTTGCGTCCA
LOC_Os03g21010
OsAffx.27944.1.S1_x_at--677--3871Chr03:11902560..11902584 (25 bp)
CTGTTGGTGATTTTGCGTCCATCTA
LOC_Os03g21010
OsAffx.27944.1.S1_x_at--517--10712Chr12:4589181..4589205 (25 bp)
TTGCGTCCATCTACACACAGCTGAA
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--376--3553Chr12:4589188..4589212 (25 bp)
CATCTACACACAGCTGAACATCGAG
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--580--3312Chr12:4589196..4589220 (25 bp)
CACAGCTGAACATCGAGCTGGCCGA
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--125--534Chr12:4589207..4589231 (25 bp)
ATCGAGCTGGCCGAGCAAGCAGCAC
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--630--6613Chr12:4589240..4589264 (25 bp)
GATTGGCCGGCAAGCAGCGACATGA
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--491--414Chr12:4589274..4589298 (25 bp)
ATCATGGTGTTCAATCGAGGAAAAA
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--89--514Chr12:4589287..4589311 (25 bp)
ATCGAGGAAAAATGGCAGCGAGGCT
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--971--4615Chr12:4589304..4589328 (25 bp)
GCGAGGCTGCCATATCAATAATTAA
LOC_Os12g08870
OsAffx.27944.1.S1_x_at--271--14Chr06:20321629..20321653 (25 bp)
CAATAATTAAAATAGGCCATGTCCA
LOC_Os06g34940
Target Sequence 
ATGGCTGTTGGTGATTTTGCGTCCATCTACACACAGCTGAACATCGAGCTGGCCGAGCAAGCAGCACCGTGGCCCGATTG
GCCGGCAAGCAGCGACATGACTGGGGAGNATCATGGTGTTCAATCGAGGAAAAATGGCAGCGAGGCTGCCATATCAATAA
TTAAAATAGGCCATGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27944.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis