Browse Element(s) Details


OsAffx.12962.1.S1_at

Description tigr:9631.m02094
TID=OsAffx.12962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thioredoxin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2100011/11Thioredoxin-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12962.1.S1_at--552--3971Chr03:11899623..11899643 (21 bp)
CGGTGCAGATGAATCTCGCGTTTGC
LOC_Os03g21000
OsAffx.12962.1.S1_at--949--3791Chr03:11899609..11899633 (25 bp)
CTCGCGTTTGCGAAAGCCACGAAGT
LOC_Os03g21000
OsAffx.12962.1.S1_at--558--6591Chr03:11899572..11899596 (25 bp)
GATTGCAGCCCAACATGCGGGAGGT
LOC_Os03g21000
OsAffx.12962.1.S1_at--596--6931Chr03:11899417..11899441 (25 bp)
GTAGTTCAATTGCAGCTTACCCTTC
LOC_Os03g21000
OsAffx.12962.1.S1_at--708--4891Chr03:11899403..11899427 (25 bp)
GCTTACCCTTCATGAGATTTCGGCA
LOC_Os03g21000
OsAffx.12962.1.S1_at--90--751Chr03:11899360..11899384 (25 bp)
ATGTATTTCTTTGCGCAGATTTGCC
LOC_Os03g21000
OsAffx.12962.1.S1_at--1143--1271Chr03:11899174..11899198 (25 bp)
AGATCTTGATCTGGTCTTGTGCTTT
LOC_Os03g21000
OsAffx.12962.1.S1_at--1113--3611Chr03:11899159..11899183 (25 bp)
CTTGTGCTTTCAATTGCTCGTGTTG
LOC_Os03g21000
OsAffx.12962.1.S1_at--406--71Chr03:11899147..11899171 (25 bp)
ATTGCTCGTGTTGCTTAATATTCGT
LOC_Os03g21000
OsAffx.12962.1.S1_at--452--2391Chr03:11899113..11899137 (25 bp)
AAACTATTCCCCATTAGCCTTGTGG
LOC_Os03g21000
OsAffx.12962.1.S1_at--408--7971Chr03:11899081..11899105 (25 bp)
GGATCCTAGTTCATGTTTAATCTTC
LOC_Os03g21000
Target Sequence 
CGGTGCAGATGAATCTCGCGTTTGCGAAAGCCACGAAGTGGTGGGAGAAGGGATTGCAGCCCAACATGCGGGAGGTCGAG
TCCGCGCAAGACCTCGTCGACTCCTTGACCAACGCCGGCGACAATCTCGTCATCGTCGACTTCTTCTCCCCTGGCTGCGG
CGGCTGCCGTGCCCTCCACCCCAAGGTCAAAATCAGAGCCGATGAAGTAGTTCAATTGCAGCTTACCCTTCATGAGATTT
CGGCAGTTCTGAAAATTTTTTACATGTATTTCTTTGCGCAGATTTGCCAGATTGCAGAGCAGAATCCGGACGTGCTGTTC
TTGCAGGTGAACTATGAGGAGCACAAGTCTATGTGCTACAGCCTCCATGTTCATGTTCTTCCTTTCTTCAGGTTCTACAG
GGGAGCTCAGGGCCGGCTCTGCAGCTTCAGCTGTACTAACGCAACTGTAAGATCTTGATCTGGTCTTGTGCTTTCAATTG
CTCGTGTTGCTTAATATTCGTATTGTAAGGAAACTATTCCCCATTAGCCTTGTGGTATAATTGGATCCTAGTTCATGTTT
AATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis