Browse Element(s) Details


Os.26655.2.S1_x_at

Description gb:AK108821.1
DB_XREF= gi:32994030
TID=Os.26655.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-F01, full insert sequence.
FL= gb:AK108821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2097011/11Phospholipid-transporting ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26655.2.S1_x_at--620--4251Chr03:11873827..11873851 (25 bp)
CCGGGCACATCATCATCGACGTGTT
LOC_Os03g20970
Os.26655.2.S1_x_at--428--2991Chr03:11873559..11873583 (25 bp)
AATGTCACCAAATCTTGGGCCCTGA
LOC_Os03g20970
Os.26655.2.S1_x_at--146--5751Chr03:11873536..11873560 (25 bp)
GACGGCTGATGATCCATTGCTAAAT
LOC_Os03g20970
Os.26655.2.S1_x_at--129--9091Chr03:11873519..11873543 (25 bp)
TGCTAAATGCTCTGCATCCGATCAG
LOC_Os03g20970
Os.26655.2.S1_x_at--490--1171Chr03:11873460..11873484 (25 bp)
AGTCAAACGTGTGTGGCTGCAGGCT
LOC_Os03g20970
Os.26655.2.S1_x_at--270--4771Chr03:11873445..11873469 (25 bp)
GCTGCAGGCTGCTAGTGACAACAGA
LOC_Os03g20970
Os.26655.2.S1_x_at--212--4851Chr03:11873354..11873378 (25 bp)
GTACTAGTACCGTGTTAGGCCTCTT
LOC_Os03g20970
Os.26655.2.S1_x_at--37--10111Chr03:11873339..11873363 (25 bp)
TAGGCCTCTTGACCAATCATATCTG
LOC_Os03g20970
Os.26655.2.S1_x_at--1146--3051Chr03:11873325..11873349 (25 bp)
AATCATATCTGGCAGTCCTTACCCT
LOC_Os03g20970
Os.26655.2.S1_x_at--492--3431Chr03:11873286..11873310 (25 bp)
CAGTATGTACGTACGGGCAACCCAA
LOC_Os03g20970
Os.26655.2.S1_x_at--329--7591Chr03:11873272..11873296 (25 bp)
GGGCAACCCAAATTTCAGGCTAGAA
LOC_Os03g20970
Target Sequence 
CCGGGCACATCATCATCGACGTGTTTGGCACCAGGCAAAGGATAATAATGGGCTATCTAGGGTTTAGCATGATTGCGGGG
ACTAATGAGTGTGGGACAAGGGCAAAGCAACAGATCAGGATAAAGGTTGTGGCAAATGTCACCAAATCTTGGGCCCTGAC
GGCTGATGATCCATTGCTAAATGCTCTGCATCCGATCAGCAAAAAGTACTCCCAACTGCTCCACCTCGCTACAAGTCAAA
CGTGTGTGGCTGCAGGCTGCTAGTGACAACAGATCAGGATAAATAAGATCGTTATTTTTTTAAGTAGTACTACTACCGGT
TAGGTTTGTTGTTTGTATCGTACTAGTACCGTGTTAGGCCTCTTGACCAATCATATCTGGCAGTCCTTACCCTGGCTCAT
TATACTACAGTATGTACGTACGGGCAACCCAAATTTCAGGCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26655.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis