Browse Element(s) Details


OsAffx.25173.1.S1_at

Description tigr:9631.m02086
TID=OsAffx.25173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=QXW lectin repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2094011/11QXW lectin repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25173.1.S1_at--1026--8311Chr03:11859910..11859934 (25 bp)
GGCTCATCCTGTTCCGGTGGAACGG
LOC_Os03g20940
OsAffx.25173.1.S1_at--833--8151Chr03:11859928..11859952 (25 bp)
GGAACGGCGGCGATAACCAACTATG
LOC_Os03g20940
OsAffx.25173.1.S1_at--652--2511Chr03:11859946..11859970 (25 bp)
AACTATGGCGGATGGCCCCATGCAT
LOC_Os03g20940
OsAffx.25173.1.S1_at--637--951Chr03:11860060..11860154 (25 bp)
AGGACCCCAAACAGCATTGGACCGT
LOC_Os03g20940
OsAffx.25173.1.S1_at--82--31Chr03:11860145..11860169 (25 bp)
ATTGGACCGTGAGCTTCCGGAACAC
LOC_Os03g20940
OsAffx.25173.1.S1_at--679--8371Chr03:11860233..11860257 (25 bp)
GGCGATGAAGCGTTCTGCTGACAAA
LOC_Os03g20940
OsAffx.25173.1.S1_at--460--3851Chr03:11860250..11860366 (25 bp)
CTGACAAAGAGCAGCCGGTTGAGCT
LOC_Os03g20940
OsAffx.25173.1.S1_at--950--9091Chr03:11860402..11860426 (25 bp)
TGCTCTGGACGCGTAGCGACAATGT
LOC_Os03g20940
OsAffx.25173.1.S1_at--894--8371Chr03:11860428..11860452 (25 bp)
GGCGAGGGATTCCATTGCATCCGCA
LOC_Os03g20940
OsAffx.25173.1.S1_at--994--9651Chr03:11860456..11860480 (25 bp)
TCAGCGACGTCAGTCTCGTCCTTGA
LOC_Os03g20940
OsAffx.25173.1.S1_at--29--4171Chr03:11860510..11860534 (25 bp)
CGCCGATTATCGTGTTTCCTTGGAA
LOC_Os03g20940
Target Sequence 
GGCTCATCCTGTTCCGGTGGAACGGCGGCGATAACCAACTATGGCGGATGGCCCCATGCATCGGCGCCGAGCCAGATCAC
GAGCCGCCCGTCCACGTCGTGTGCCTCACCGTTCGTCACGGCGCGGTTGTACTCGCCCGCATCGACCACAAGGACCCCAA
ACAGCATTGGACCGTGAGCTTCCGGAACACCGGGCGCGTGACCGACGAGGAAGGACACCGGTCGTTTCTCCTCCTGAACC
CGTCCACCGGGAAGGCGATGAAGCGTTCTGCTGACAAAGAGCAGCCGGTTGAGCTCGTCGGCCACGGCCCGGACTCGGTG
GACGTGGCGCTGCTCTGGACGCGTAGCGACAATGTCGGCGAGGGATTCCATTGCATCCGCACCGTCAGCGACGTCAGTCT
CGTCCTTGACGCGGCGGGAGGCGGCAGGCACGACGGCACGCCGATTATCGTGTTTCCTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis