Browse Element(s) Details


OsAffx.8073.1.S1_at

Description gb:NM_196742.1
DB_XREF= gi:37534843
TID=OsAffx.8073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0094K20.17), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3099011/11transposon protein, putative, unclassified
LOC_Os03g209305/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30960OsAffx.30618.1.S1_at3/1110+15830346..15830753hypothetical protein
LOC_Os10g30970Os.46673.1.S1_x_at3/1110+15831971..15834247expressed protein
LOC_Os10g30970Os.27697.1.A1_x_at2/1110+15831971..15834247expressed protein
LOC_Os10g30980Os.7327.1.S1_a_at10/1110+15836922..15837839hypothetical protein
LOC_Os10g30980Os.49252.1.S1_x_at1/1110+15836922..15837839hypothetical protein
LOC_Os10g30990OsAffx.8073.1.S1_at11/1110+15841160..15844130transposon protein, putative, unclassified
LOC_Os10g31000Os.8950.1.S2_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31000Os.8950.1.S1_a_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31010OsAffx.19542.3.S1_x_at4/1110+15858680..15859324retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31020NANA10+15862719..15866051retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8073.1.S1_at--1127--8512Chr10:15842872..15842896 (25 bp)
TGGATGTCCAACCTCCTTTGAAGAA
LOC_Os10g30990
OsAffx.8073.1.S1_at--347--9811Chr10:15842906..15842930 (25 bp)
TAACTGTGGCGAGGAGCCCTGTTAT
LOC_Os10g30990
OsAffx.8073.1.S1_at--963--9012Chr10:15842964..15842988 (25 bp)
TGCACCAAATATCACGCTTGGCGTG
LOC_Os10g30990
OsAffx.8073.1.S1_at--956--2851Chr10:15843628..15843652 (25 bp)
AAGTGCCCAAAGAGCTACAGATGTC
LOC_Os10g30990
OsAffx.8073.1.S1_at--805--232Chr10:15843672..15843696 (25 bp)
ATATTTGTGGGCCATTCCCTACGGC
LOC_Os10g30990
OsAffx.8073.1.S1_at--417--8292Chr10:15843694..15843718 (25 bp)
GGCTTCCTGGAATGGTCAACGATAT
LOC_Os10g30990
OsAffx.8073.1.S1_at--6--9692Chr10:15843723..15843747 (25 bp)
TCACGTTCATAGACGATTTCTCAAG
LOC_Os10g30990
OsAffx.8073.1.S1_at--239--6511Chr10:15843747..15843771 (25 bp)
GATATGGCAACTCACAACCATGGCT
LOC_Os10g30990
OsAffx.8073.1.S1_at--774--2635Chr10:15843762..15843782 (21 bp)
AACCATGGCTACAGTTTCTGGCGAT
LOC_Os10g30990
OsAffx.8073.1.S1_at--1091--6271Chr10:15843938..15843962 (25 bp)
GATGTTTGGAGGCTCGACTCGACCC
LOC_Os10g30990
OsAffx.8073.1.S1_at--381--5811Chr10:15843958..15843982 (25 bp)
GACCCCGTCTCTTCAGCGGTTGGGA
LOC_Os10g30990
Target Sequence 
TGGATGTCCAACCTCCTTTGAAGAAAAGGGAAAATAACTGTGGCGAGGAGCCCTGTTATTTTTGCAAGAAGGAAGGACAT
ATGAAGAAAAACTGCACCAAATATCACGCTTGGCGTGCTAAGAAAGGGGAAACAGACGAATACAAGGAAATTAAGTGCCC
AAAGAGCTACAGATGTCTTAGAACTGATTCATACAGATATTTGTGGGCCATTCCCTACGGCTTCCTGGAATGGTCAACGA
TATTTTATCACGTTCATAGACGATTTCTCAAGATATGGCAACTCACAACCATGGCTACAGTTTCTGGCGATGGCTGGTGG
AAGAAGCAACTGGAGGCGGGACTCGGGATGGGAGCTCGCCGGTTGACGATGGAGATGTTTGGAGGCTCGACTCGACCCCG
TCTCTTCAGCGGTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis