Browse Element(s) Details


Os.27697.1.A1_x_at

Description gb:CB633766
DB_XREF= gi:29628755
DB_XREF=OSIIEb12N07.r
CLONE=OSIIEb12N07
TID=Os.27697.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27697 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein pir:T45681 (A.thaliana) T45681 ketol-acid reductoisomerase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g309702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30960OsAffx.30618.1.S1_at3/1110+15830346..15830753hypothetical protein
LOC_Os10g30970Os.46673.1.S1_x_at3/1110+15831971..15834247expressed protein
LOC_Os10g30970Os.27697.1.A1_x_at2/1110+15831971..15834247expressed protein
LOC_Os10g30980Os.7327.1.S1_a_at10/1110+15836922..15837839hypothetical protein
LOC_Os10g30980Os.49252.1.S1_x_at1/1110+15836922..15837839hypothetical protein
LOC_Os10g30990OsAffx.8073.1.S1_at11/1110+15841160..15844130transposon protein, putative, unclassified
LOC_Os10g31000Os.8950.1.S2_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31000Os.8950.1.S1_a_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31010OsAffx.19542.3.S1_x_at4/1110+15858680..15859324retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27697.1.A1_x_at--729--6811Chr02:2847707..2847731 (25 bp)
GTTTTTGCGCTCATCAAGCAGCGGC
NONE
Os.27697.1.A1_x_at--960--5391NONE
GAAGCTGCCAGTGGCCAGTCCCTTG
NONE
Os.27697.1.A1_x_at--1026--9191NONE
TGCCAGTGGCCAGTCCCTTGTGGAA
NONE
Os.27697.1.A1_x_at--1063--4331NONE
CCAGTGGCCAGTCCCTTGTGGAAAT
NONE
Os.27697.1.A1_x_at--61--1151Chr10:15832921..15833039 (24 bp)
AGTCCCTTGTGGAAATGTTCTTTCA
LOC_Os10g30970
Os.27697.1.A1_x_at--932--2394Chr02:2847891..2847915 (25 bp)
AAACTTGTGGTTATCAAAGCTCTGG
NONE
Os.27697.1.A1_x_at--309--10451Chr02:2849441..2849465 (25 bp)
TTAGAGAGTTTTTTCACTACAGGAA
NONE
Os.27697.1.A1_x_at--234--5911Chr02:2849444..2849468 (25 bp)
GAGAGTTTTTTCACTACAGGAAGGT
NONE
Os.27697.1.A1_x_at--1038--6051Chr02:2849446..2849470 (25 bp)
GAGTTTTTTCACTACAGGAAGGTGA
NONE
Os.27697.1.A1_x_at--1146--3271Chr02:2849455..2849479 (25 bp)
CACTACAGGAAGGTGAGATGACCAC
NONE
Os.27697.1.A1_x_at--481--3853Chr02:2849492..2849516 (25 bp)
CTGCACTGTGTAGGCCCTTGCTTGA
NONE
Target Sequence 
GTTTTTGCGCTCATCAAGCAGCGGCCTACACTCCCGCCGCCGAAGCTGCCAGTGGCCAGTCCCTTGTGGAAATGTTCTTT
CACATGACAAAACTTGTGGTTATCAAAGCTCTGGACATCTACAGAAGAACAAGGAATCTGCCACTGCNGTGAAACCAACG
GGCGANCGNGTTGACCACCGAANTCGCCNTCATGNGATTTCCACCAANATCGCCATAANCCGGTCTTNNCCCAATAACGT
TGCNGTAAAACCCCAGGCAATCTTGATCNATTAATTTNNNNNNNNNNNNNNNNNNNNNNNNGAGAGAGAGAGAGAGAGAG
AGANANAGAGAGGAACGTCTATGATCANTTGCTCCAGTTTAGAGAGTTTTTTCACTACAGGAAGGTGAGATGACCACCAC
CAGCTGAAACTGCACTGTGTAGGCCCTTGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27697.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis