Browse Element(s) Details


Os.8950.1.S1_a_at

Description gb:AK120481.1
DB_XREF= gi:37990104
TID=Os.8950.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acetohydroxyacid isomeroreductase (OSJNBa0094K20.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112B17, full insert sequence.
FL= gb:AK120481.1 gb:AK066993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3100011/11Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30960OsAffx.30618.1.S1_at3/1110+15830346..15830753hypothetical protein
LOC_Os10g30970Os.46673.1.S1_x_at3/1110+15831971..15834247expressed protein
LOC_Os10g30970Os.27697.1.A1_x_at2/1110+15831971..15834247expressed protein
LOC_Os10g30980Os.7327.1.S1_a_at10/1110+15836922..15837839hypothetical protein
LOC_Os10g30980Os.49252.1.S1_x_at1/1110+15836922..15837839hypothetical protein
LOC_Os10g30990OsAffx.8073.1.S1_at11/1110+15841160..15844130transposon protein, putative, unclassified
LOC_Os10g31000Os.8950.1.S2_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31000Os.8950.1.S1_a_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31010OsAffx.19542.3.S1_x_at4/1110+15858680..15859324retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31020NANA10+15862719..15866051retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31030Os.17789.1.S1_a_at11/1110+15871859..15878533MT-A70 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8950.1.S1_a_at--386--8871Chr10:15851875..15851899 (25 bp)
TGATGAGCGACTACAAGGTGGAGAT
LOC_Os10g31000
Os.8950.1.S1_a_at--871--6871Chr10:15852265..15852289 (25 bp)
GTATTTATCAAGGTGGTGTCTGGAA
LOC_Os10g31000
Os.8950.1.S1_a_at--469--6951Chr10:15852297..15852321 (25 bp)
GTAGAATTGCCTGATGCATATCCTT
LOC_Os10g31000
Os.8950.1.S1_a_at--400--4951Chr10:15852312..15852336 (25 bp)
GCATATCCTTACAAATCTCCGTCGA
LOC_Os10g31000
Os.8950.1.S1_a_at--237--9491Chr10:15852327..15852351 (25 bp)
TCTCCGTCGATTGGTTTCGTTAACA
LOC_Os10g31000
Os.8950.1.S1_a_at--300--2291Chr10:15852473..15852493 (21 bp)
AAATGTCTGGTTCTGTGTGTTTGGA
LOC_Os10g31000
Os.8950.1.S1_a_at--851--9791Chr10:15852500..15852524 (25 bp)
TAACCAGACGTGGAGCCCAATGTTT
LOC_Os10g31000
Os.8950.1.S1_a_at--979--2971Chr10:15852633..15852657 (25 bp)
AATGTGTTCGAAGTCTTCCTTCCAC
LOC_Os10g31000
Os.8950.1.S1_a_at--339--2051Chr10:15852659..15852683 (25 bp)
ACTTCTATTGTACCCAAATCCTTCT
LOC_Os10g31000
Os.8950.1.S1_a_at--631--3291Chr10:15852673..15852697 (25 bp)
CAAATCCTTCTGACCCATTAAATGG
LOC_Os10g31000
Os.8950.1.S1_a_at--1156--8851Chr10:15852712..15852736 (25 bp)
TGATGATGCGTGATCGTCCTGCTTA
LOC_Os10g31000
Target Sequence 
TGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAGT
ATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGT
TAACAAGATTTATCATCCTAATGTGGATGAAATGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAA
TGTTTGATCTAGTTAATGTGTTCGAAGTCTTCCTTCCACAACTTCTATTGTACCCAAATCCTTCTGACCCATTAAATGGA
GAGGCTGCTGCACTGATGATGCGTGATCGTCCTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8950.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis