Browse Element(s) Details


Os.46594.1.S1_at

Description gb:AK108348.1
DB_XREF= gi:32993557
TID=Os.46594.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polyprotein (OSJNBa0094K20.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B09, full insert sequence.
FL= gb:AK108348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g309448/11ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30930NANA10+15805796..15806734retrotransposon protein, putative, unclassified
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30960OsAffx.30618.1.S1_at3/1110+15830346..15830753hypothetical protein
LOC_Os10g30970Os.46673.1.S1_x_at3/1110+15831971..15834247expressed protein
LOC_Os10g30970Os.27697.1.A1_x_at2/1110+15831971..15834247expressed protein
LOC_Os10g30980Os.7327.1.S1_a_at10/1110+15836922..15837839hypothetical protein
LOC_Os10g30980Os.49252.1.S1_x_at1/1110+15836922..15837839hypothetical protein
LOC_Os10g30990OsAffx.8073.1.S1_at11/1110+15841160..15844130transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46594.1.S1_at--754--3891Chr10:15811148..15811172 (25 bp)
CTGGAGGCGAGCTTCCTCAGGGCCC
NONE
Os.46594.1.S1_at--229--3191Chr10:15811213..15811237 (25 bp)
CAAGAAGGGCAAGTTCCTCGCGCCG
NONE
Os.46594.1.S1_at--1086--2191Chr10:15811374..15811398 (25 bp)
ACAACCACCTCTCCATGGCGTTGAT
NONE
Os.46594.1.S1_at--262--8211Chr10:15815146..15815170 (25 bp)
GGAATCGCAATTGTGATCTTGACAT
LOC_Os10g30944
Os.46594.1.S1_at--626--3211Chr10:15815176..15815200 (25 bp)
CAAGGATGCGATTTTATTTCTGATG
LOC_Os10g30944
Os.46594.1.S1_at--1014--6311Chr10:15815197..15815221 (25 bp)
GATGCAAGAACTTTAGTCAATGTCT
LOC_Os10g30944
Os.46594.1.S1_at--446--5991Chr10:15815229..15815253 (25 bp)
GAGACTCGGTCTATTGCACTTGATT
LOC_Os10g30944
Os.46594.1.S1_at--239--10231Chr10:15815240..15815264 (25 bp)
TATTGCACTTGATTCCATGGATGTT
LOC_Os10g30944
Os.46594.1.S1_at--317--4331Chr10:15815254..15815278 (25 bp)
CCATGGATGTTTTACCGAATCTTGT
LOC_Os10g30944
Os.46594.1.S1_at--740--9951Chr10:15815266..15815290 (25 bp)
TACCGAATCTTGTTGTTTGAAATTT
LOC_Os10g30944
Os.46594.1.S1_at--275--10111Chr10:15815289..15815313 (25 bp)
TTTGGAATGAACTGTTTATGGCCGT
LOC_Os10g30944
Target Sequence 
CTGGAGGCGAGCTTCCTCAGGGCCCAGAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTT
CCTCGCGCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGAGAACCTCGTGGGGA
TGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCGCTCCGGCAGGAACGCCGCCGACAACCACCTCTCC
ATGGCGTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCC
CGAGGCAACAGAGCCTGAGGTNANNNGNNNANNNNNNNNNANNNNNNNNNNNNNNNANNNNNTNNNNNANNNNGGAATCG
CAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTATTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTATGAGA
CTCGGTCTATTGCACTTGATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGTTTATGGCCG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis