Browse Element(s) Details


OsAffx.12960.1.S1_at

Description tigr:9631.m02084
TID=OsAffx.12960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2092010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20910Os.51648.2.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed
LOC_Os03g20910Os.51648.1.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12960.1.S1_at--919--4171Chr03:11848529..11848553 (25 bp)
CCCTTCGTCAGTATGGTCAGCAGTA
LOC_Os03g20920
OsAffx.12960.1.S1_at--275--7831Chr03:11848543..11848567 (25 bp)
GGTCAGCAGTATCCCAAGATCATCT
LOC_Os03g20920
OsAffx.12960.1.S1_at--411--2811NONE
AAGATCATCTCTGCACTCGTTGTCT
NONE
OsAffx.12960.1.S1_at--262--9031Chr03:11848569..11848624 (25 bp)
TGCACTCGTTGTCTGGCACAAGGAC
LOC_Os03g20920
OsAffx.12960.1.S1_at--794--10631Chr03:11848670..11848694 (25 bp)
TTCGCACTCGTGAACAAGGCCACTG
LOC_Os03g20920
OsAffx.12960.1.S1_at--383--9711Chr03:11848704..11848728 (25 bp)
TCAAACACTCCTTGGGCTACTGTTG
LOC_Os03g20920
OsAffx.12960.1.S1_at--642--5351Chr03:11848812..11848836 (25 bp)
GAAGATGACGTTTGTATTTCACCAA
LOC_Os03g20920
OsAffx.12960.1.S1_at--2--4851Chr03:11848921..11848945 (25 bp)
GCTACAGGCGCATCCACATGATGAA
LOC_Os03g20920
OsAffx.12960.1.S1_at--318--231Chr03:11848959..11848983 (25 bp)
ATATTCGACGCAGAGGAGGACACCC
LOC_Os03g20920
OsAffx.12960.1.S1_at--487--5451Chr03:11849033..11849057 (25 bp)
GAACGAAGGCCTGAACCAGATCTGG
LOC_Os03g20920
OsAffx.12960.1.S1_at--890--9571Chr03:11849134..11849158 (25 bp)
TCTTCCTCTCTGTTCGTGACGGTGT
LOC_Os03g20920
Target Sequence 
CCCTTCGTCAGTATGGTCAGCAGTATCCCAAGATCATCTCTGCACTCGTTGTCTGGCACAAGGACGCAAAATACAGCGCC
GGCATCAAGGACGAGGCAGGCCGTCCTGCCTTCGCACTCGTGAACAAGGCCACTGGCGATGCCCTCAAACACTCCTTGGG
CTACTGTTGCCCTTTAAAGAGTAGGTTTAAACATGAAGATGACGTTTGTATTTCACCAAATCATTTGGTAAGGGTGATCA
AGTTTGAGCCGGGGTATCTGGACGAGTCGGTCCTGTGGACTGCGAGCGTGGACGTGGCCGACGGCTACAGGCGCATCCAC
ATGATGAACAACGCCGACTACATATTCGACGCAGAGGAGGACACCCCGCAGTACGGCGGCGCGCGCGACGGCACGCGGCT
CATATTGTTCCGGTGGAACGAAGGCCTGAACCAGATCTGGCGGATGGTTCCGTGCGGTGGCGGCGTGCTGGAGCACGAGA
AGCCCCTCCGCGTCGTCTGCCACAGCAACCAGGCACTCTTCCTCTCTGTTCGTGACGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis