Browse Element(s) Details


OsAffx.3286.1.S1_x_at

Description tigr:9631.m02087
TID=OsAffx.3286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phospholipid-translocating P-type ATPase, flippase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2094911/11Phospholipid-transporting ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3286.1.S1_x_at--1088--311Chr03:11863530..11863554 (25 bp)
ATACTGCTGTCCCAACTATCGTTGT
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--648--171Chr03:11863405..11863429 (25 bp)
ATTTTTGTCATGCTGGACTCCATCT
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--948--8251Chr03:11863380..11863404 (25 bp)
GGCAGAGCCTCGCAGTTTTCTTTAT
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--724--10351Chr03:11863360..11863384 (25 bp)
TTTATCCCTTACCTTGCATACAGAA
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--266--5991Chr03:11863308..11863332 (25 bp)
GAGACCTCTGGACACTAGCTGTTGT
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--79--7371Chr03:11863276..11863300 (25 bp)
GTGAACATTCACCTTGCAATCGATG
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--113--10071Chr03:11863206..11863230 (25 bp)
TAGTCGCAACGCTGATTTGTGTCAT
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--857--271Chr03:11863177..11863201 (25 bp)
ATAGACTCCATACCGATATTGCCTG
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--348--1951Chr03:11863037..11863061 (25 bp)
ACTGGACTGTTTTGGGCATTGCTGC
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--831--6571Chr03:11862990..11863014 (25 bp)
GATTCCTCATTTTGTCGCTAAGGCC
LOC_Os03g20949
OsAffx.3286.1.S1_x_at--480--1071Chr03:11862962..11862986 (25 bp)
AGGGAGCATTTCCTTCCGAATGATA
LOC_Os03g20949
Target Sequence 
ATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGACAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTC
TATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCT
CGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGGTGCGAGTCTGGGAGACCTCTGGACACTAG
CTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGC
AGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGT
GATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCA
TAAGGGAGCATTTCCTTCCGAATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3286.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis