Browse Element(s) Details


Os.25243.1.A1_at

Description gb:AK059185.1
DB_XREF= gi:32969203
TID=Os.25243.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.25243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G08, full insert sequence.
FL= gb:AK059185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2094911/11Phospholipid-transporting ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25243.1.A1_at--1072--3551Chr03:11862837..11862861 (25 bp)
CATACTTTTTGTTCATTCAGATAGG
LOC_Os03g20949
Os.25243.1.A1_at--1072--6491Chr03:11862818..11862842 (25 bp)
GATAGGATAGCTCTACACCTTTCTT
LOC_Os03g20949
Os.25243.1.A1_at--303--1591Chr03:11862810..11862834 (25 bp)
AGCTCTACACCTTTCTTTGGTTCTT
LOC_Os03g20949
Os.25243.1.A1_at--1015--7891Chr03:11862792..11862816 (25 bp)
GGTTCTTTTTACTGTGTGTATACTA
LOC_Os03g20949
Os.25243.1.A1_at--924--7431Chr03:11862777..11862801 (25 bp)
GTGTATACTAGGCAATTCTTTCTGT
LOC_Os03g20949
Os.25243.1.A1_at--56--5211Chr03:11862766..11862790 (25 bp)
GCAATTCTTTCTGTAGTAAGCACAT
LOC_Os03g20949
Os.25243.1.A1_at--986--3671Chr03:11862760..11862784 (25 bp)
CTTTCTGTAGTAAGCACATTTCTTG
LOC_Os03g20949
Os.25243.1.A1_at--512--10711Chr03:11862731..11862755 (25 bp)
TTGCTGCCTTTGTCAGCTATCCAAA
LOC_Os03g20949
Os.25243.1.A1_at--1035--7931Chr03:11862706..11862730 (25 bp)
GGATAGGTTTCTTTGTACCCATGCT
LOC_Os03g20949
Os.25243.1.A1_at--294--10251Chr03:11862695..11862719 (25 bp)
TTTGTACCCATGCTGTGTATCCGCC
LOC_Os03g20949
Os.25243.1.A1_at--561--6891Chr03:11862679..11862703 (25 bp)
GTATCCGCCTGCCAAATTTTGTTGA
LOC_Os03g20949
Target Sequence 
CATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTT
TCTGTAGTAAGCACATTTCTTGNTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGT
ATCCGCCTGCCAAATTTTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25243.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis