Browse Element(s) Details


Os.5830.1.S1_at

Description gb:AK058426.1
DB_XREF= gi:32968444
TID=Os.5830.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E02, full insert sequence.
FL= gb:AK058426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2100011/11Thioredoxin-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21030Os.7235.1.S1_at11/113+11916271..11918306GRAB2 protein, putative, expressed
LOC_Os03g21030Os.51926.1.S1_x_at1/113+11916271..11918306GRAB2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5830.1.S1_at--827--6491Chr03:11898643..11898667 (25 bp)
GATAGATGCAGCCTTGGCCCAACTA
LOC_Os03g21000
Os.5830.1.S1_at--2--4791Chr03:11898586..11898610 (25 bp)
GCTGCGAACAAGGATCTGCAGTTCA
LOC_Os03g21000
Os.5830.1.S1_at--972--1431Chr03:11898545..11898569 (25 bp)
AGAACTGGTTCCTAGCGGAGATGCC
LOC_Os03g21000
Os.5830.1.S1_at--1087--4111Chr03:11898521..11898545 (25 bp)
CGCAGCTGCCCAGGAATTGGATCGT
LOC_Os03g21000
Os.5830.1.S1_at--66--1531Chr03:11898456..11898480 (25 bp)
AGCAGGGCTCTGAAGAGAGGTCCTT
LOC_Os03g21000
Os.5830.1.S1_at--13--6031Chr03:11898442..11898466 (25 bp)
GAGAGGTCCTTGGTCTCATCAGGCA
LOC_Os03g21000
Os.5830.1.S1_at--1063--8591Chr03:11898392..11898416 (25 bp)
TGGTCTGTATGATCGCATCCCTCAA
LOC_Os03g21000
Os.5830.1.S1_at--1028--4971Chr03:11898378..11898402 (25 bp)
GCATCCCTCAATTCTGTACAGTTTC
LOC_Os03g21000
Os.5830.1.S1_at--642--4311Chr03:11898324..11898348 (25 bp)
CCTTATGGTTGAGTGCAGGCTAATA
LOC_Os03g21000
Os.5830.1.S1_at--1078--4531Chr03:11898281..11898305 (25 bp)
GCCCGTTCATCTGCATGTAGCGTAG
LOC_Os03g21000
Os.5830.1.S1_at--148--171Chr03:11898166..11898190 (25 bp)
ATTTTGCCTAGTTGTGTGACCTTTG
LOC_Os03g21000
Target Sequence 
GATAGATGCAGCCTTGGCCCAACTAGGGGGCTCGAGGAGTCGGAGCTATTGGCGCTGGCTGCGAACAAGGATCTGCAGTT
CAACTACACCAAGAAACCAGAACTGGTTCCTAGCGGAGATGCCGCAGCTGCCCAGGAATTGGATCGTGGAAGCACAAAGC
TTTCTCCACCCGCAAAACCATTGGTCAAGCAGGGCTCTGAAGAGAGGTCCTTGGTCTCATCAGGCAGATGAGATGAAATG
AGATGAGATGCTGGTCTGTATGATCGCATCCCTCAATTCTGTACAGTTTCTTGATTGTTCTTGATGTGTACAGGTTGTGC
CTTATGGTTGAGTGCAGGCTAATATTTTTTATTGTGAAGCCTGCCCGTTCATCTGCATGTAGCGTAGCAGCAAGCAGTAG
TATCAGCAAGTGTTGTAGCCTTGTAGGCATGTAGCAATGCCAGGGATTTGTATGGGTAGCTGTATGAATTCATCTATATT
TTGCCTAGTTGTGTGACCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis