Browse Element(s) Details


OsAffx.12963.1.S1_at

Description tigr:9631.m02101
TID=OsAffx.12963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2107011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21060Os.17286.1.S1_at11/113+11952807..11955207NAC domain transcription factor, putative, expressed
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12963.1.S1_at--284--591Chr03:11966815..11966837 (23 bp)
ATGCTCCAGTTCATAAGCCCAAGTC
LOC_Os03g21070
OsAffx.12963.1.S1_at--197--1671Chr03:11966828..11966852 (25 bp)
AGCCCAAGTCGATGCAGTCCACTAT
LOC_Os03g21070
OsAffx.12963.1.S1_at--419--6331Chr03:11966838..11966862 (25 bp)
GATGCAGTCCACTATGGGCCAATGG
LOC_Os03g21070
OsAffx.12963.1.S1_at--864--7531Chr03:11966853..11966877 (25 bp)
GGGCCAATGGGCTGAACACATCCCT
LOC_Os03g21070
OsAffx.12963.1.S1_at--197--5511Chr03:11966866..11966890 (25 bp)
GAACACATCCCTTTTTGGAGTGGAA
LOC_Os03g21070
OsAffx.12963.1.S1_at--1121--4211Chr03:11966932..11966956 (25 bp)
CCGCAGCGGACTTGTGGGTAGCACA
LOC_Os03g21070
OsAffx.12963.1.S1_at--1117--6951Chr03:11966949..11966973 (25 bp)
GTAGCACACTGGTCTTCGCTGTTCG
LOC_Os03g21070
OsAffx.12963.1.S1_at--513--5691Chr03:11966975..11966999 (25 bp)
GACTTCGCGTCGTTGAACCTTTTGC
LOC_Os03g21070
OsAffx.12963.1.S1_at--931--5411Chr03:11966989..11967013 (25 bp)
GAACCTTTTGCGTTGCCGAAGTGAC
LOC_Os03g21070
OsAffx.12963.1.S1_at--261--2871Chr03:11967007..11967031 (25 bp)
AAGTGACCAAGAATCCCGTGACCAG
LOC_Os03g21070
OsAffx.12963.1.S1_at--917--4711Chr03:11967055..11967079 (25 bp)
GCTGGTACTACACGCTATTACTGTT
LOC_Os03g21070
Target Sequence 
ATGCTCCAGTTCATAAGCCCAAGTCGATGCAGTCCACTATGGGCCAATGGGCTGAACACATCCCTTTTTGGAGTGGAATT
GCATGCTCCTGATCCGCTCTCACGTGATGGCCGCCCGGGCCGCAGCGGACTTGTGGGTAGCACACTGGTCTTCGCTGTTC
GCGACTTCGCGTCGTTGAACCTTTTGCGTTGCCGAAGTGACCAAGAATCCCGTGACCAGCTACAGTCACTCCATCGTCCG
CAGCTGGTACTACACGCTATTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis