Browse Element(s) Details


Os.31565.1.S1_at

Description gb:AK107122.1
DB_XREF= gi:32992331
TID=Os.31565.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative growth regulator protein (OSJNBb0014I10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B06, full insert sequence.
FL= gb:AK107122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2109011/11Axi 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21110OsAffx.12964.1.S1_at10/113+11998042..12000162emp24/gp25L/p24 family protein
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31565.1.S1_at--172--8651Chr03:11987822..11987846 (25 bp)
TGGGACGAATTCTCTACTGCTGTGA
LOC_Os03g21090
Os.31565.1.S1_at--718--8991Chr03:11987800..11987824 (25 bp)
TGAAGGAGCTACACGAGGGCCGAAT
LOC_Os03g21090
Os.31565.1.S1_at--328--8411Chr03:11987783..11987807 (25 bp)
GGCCGAATGAGCGAACCCACCAGAA
LOC_Os03g21090
Os.31565.1.S1_at--512--2931Chr03:11987760..11987784 (25 bp)
AAGGAAAGCTATTGCCGGGCAGCCA
LOC_Os03g21090
Os.31565.1.S1_at--924--2551Chr03:11987518..11987542 (25 bp)
AACTGTCAAGGCTCATATTTTTGCT
LOC_Os03g21090
Os.31565.1.S1_at--63--8931Chr03:11987494..11987518 (25 bp)
TGAGCCACACCCCAGTTAGTGTGAA
LOC_Os03g21090
Os.31565.1.S1_at--1159--10051Chr03:11987465..11987489 (25 bp)
TAGTAGCACTTGTCTGCCTTCGAAA
LOC_Os03g21090
Os.31565.1.S1_at--30--5571Chr03:11987444..11987468 (25 bp)
GAAAGCTGATCGTTCTGACGCAAAT
LOC_Os03g21090
Os.31565.1.S1_at--763--1291Chr03:11987221..11987245 (25 bp)
AGATGCCATGTTGTGTCGGTTGTAT
LOC_Os03g21090
Os.31565.1.S1_at--548--331Chr03:11987104..11987128 (25 bp)
ATACATTGACCTGGTAATCTCCCCA
LOC_Os03g21090
Os.31565.1.S1_at--76--5531Chr03:11987069..11987093 (25 bp)
GAAACATCGTTGAGCACTGGTACAT
LOC_Os03g21090
Target Sequence 
TGGGACGAATTCTCTACTGCTGTGAAGGAGCTACACGAGGGCCGAATGAGCGAACCCACCAGAAGGAAAGCTATTGCCGG
GCAGCCAAAGGAAGAGGACTACTTCTATGCTAATCCACATGAATGTCTTGGAGCTGCGAGAAAGCGAAGGGAGAAGCTAA
AACATACTGAGATATGAAAGCTGCCTGGTAGGCTGCAGGAAATGCAAAACAAACTTCCTCATTTAACTGTCAAGGCTCAT
ATTTTTGCTGAGCCACACCCCAGTTAGTGTGAATAAGTAGTAGCACTTGTCTGCCTTCGAAAGCTGATCGTTCTGACGCA
AATCGAAGCAAACATTCTTCTGAAGATCCACGTGGTTATAGTGTCAGATGCCATGTTGTGTCGGTTGTATTTGCTGTTGA
AGACTTGAAGTACGTATTTAGTGTGGAAAATGCAATGTTAAACTGTTGATGGACCTATTGTATTGATGTAGACTAATAGT
ATATACATTGACCTGGTAATCTCCCCATGCATTGCATGAAACATCGTTGAGCACTGGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis