Browse Element(s) Details


Os.8675.1.S1_at

Description gb:CB659454
DB_XREF= gi:29663179
DB_XREF=OSJNEc16H11.r
CLONE=OSJNEc16H11
TID=Os.8675.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.8675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative apyrase (OSJNBb0014I10.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2112011/11Nucleoside-triphosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21110OsAffx.12964.1.S1_at10/113+11998042..12000162emp24/gp25L/p24 family protein
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21140Os.49095.1.S1_at11/113+12025846..12029933Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8675.1.S1_at--1042--10771Chr03:12001251..12001275 (25 bp)
TTGTAAACCCGAAGGCACCATTTGC
LOC_Os03g21120
Os.8675.1.S1_at--313--6771Chr03:12001222..12001246 (25 bp)
GTTAAACCCTCAGACTTCGAAGAAG
LOC_Os03g21120
Os.8675.1.S1_at--850--8031Chr03:12001133..12001157 (25 bp)
GGAGAACGTTCCATACCTTTGCATG
LOC_Os03g21120
Os.8675.1.S1_at--258--7971Chr03:12001109..12001133 (25 bp)
GGATCTAGTCTACCAGTACACGTTA
LOC_Os03g21120
Os.8675.1.S1_at--106--6511Chr03:12000986..12001047 (25 bp)
GATTTGGTGTGGATCCCTACCAGGA
LOC_Os03g21120
Os.8675.1.S1_at--787--211Chr03:12000925..12000949 (25 bp)
ATTTGTTGAAGCAGCATGGCCCCTT
LOC_Os03g21120
Os.8675.1.S1_at--160--6151Chr03:12000888..12000912 (25 bp)
GAGGTTGCATCTTCATCATAGCAGA
LOC_Os03g21120
Os.8675.1.S1_at--870--6791Chr03:12000816..12000840 (25 bp)
GTTTTGGCTTAGTTCACCGACTTAG
LOC_Os03g21120
Os.8675.1.S1_at--732--3371Chr03:12000741..12000765 (25 bp)
CACCATTTGTTGTCCATTTTCGATT
LOC_Os03g21120
Os.8675.1.S1_at--49--9391Chr03:12000722..12000746 (25 bp)
TCGATTCTATTTGTTTGGCCGCCTA
LOC_Os03g21120
Os.8675.1.S1_at--985--4451Chr03:12000702..12000726 (25 bp)
GCCTACACCTTGACGTACACATGAG
LOC_Os03g21120
Target Sequence 
TTGTAAACCCGAAGGCACCATTTGCTAAGGTTAAACCCTCAGACTTCGAAGAAGCTGCACGACGTGTTTGTAAACTGAAT
GTGAAGGATGCACAGGCCACCTACCCGGATGTTTCAGAGGAGAACGTTCCATACCTTTGCATGGATCTAGTCTACCAGTA
CACGTTACTTGTGGATGGATTTGGTGTGGATCCCTACCAGGATATTACATTGGTAAAGAAGGTGCCTTATAGCAATTCAT
TTGTTGAAGCAGCATGGCCCCTTGGTAGTGCCATTGAGGTTGCATCTTCATCATAGCAGAAATAGCTTGGCTATAACTTA
TGAAAGAAAGGAAGGTCTCAGCATATAGTTTTGGCTTAGTTCACCGACTTAGTAGGGAGTGTAGATCCTATGTTTGAGGT
TAGATTCTTTTTTTACTTGATTCACCATTTGTTGTCCATTTTCGATTCTATTTGTTTGGCCGCCTACACCTTGACGTACA
CATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis