Browse Element(s) Details


OsAffx.12964.1.S1_at

Description tigr:9631.m02105
TID=OsAffx.12964.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=emp24gp25Lp24 family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2111010/11emp24/gp25L/p24 family protein
LOC_Os10g203101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21110OsAffx.12964.1.S1_at10/113+11998042..12000162emp24/gp25L/p24 family protein
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0005489molecular_functionelectron transporter activity
GO:0008320molecular_functionprotein carrier activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12964.1.S1_at--199--51Chr03:11998366..11998390 (25 bp)
ATTGTCTCCATCGACGTGCAGTGGA
LOC_Os03g21110
OsAffx.12964.1.S1_at--69--9011Chr03:11998382..11998406 (25 bp)
TGCAGTGGACCACCGAAGTCCGCGA
LOC_Os03g21110
OsAffx.12964.1.S1_at--341--1671Chr03:11998443..11998467 (25 bp)
AGCCGCCAAGGAAGGCCACATCGAT
LOC_Os03g21110
OsAffx.12964.1.S1_at--144--8212Chr03:11998849..11998871 (23 bp)
GGAATGTAGATGCACACGCTTCTTC
LOC_Os03g21110
OsAffx.12964.1.S1_at--1115--5111NONE
GCACACGCTTCTTCGATGATTGGAG
NONE
OsAffx.12964.1.S1_at--863--2211Chr03:11999880..11999904 (25 bp)
AAATTGGAGGTTTCTACTCGGCTCA
LOC_Os03g21110
OsAffx.12964.1.S1_at--1025--6831Chr03:11999889..11999913 (25 bp)
GTTTCTACTCGGCTCATACATGAAG
LOC_Os03g21110
OsAffx.12964.1.S1_at--332--1311Chr03:11999914..11999935 (22 bp)
AGATGATTTCTCTCCGACGGAGCGA
LOC_Os03g21110
OsAffx.12964.1.S1_at--934--2671Chr03:12000034..12000058 (25 bp)
AAGCTCAACGAAGACACGACCATGA
LOC_Os03g21110
OsAffx.12964.1.S1_at--578--651Chr03:12000055..12000079 (25 bp)
ATGAAAATACACTCGTTCACCCTGC
LOC_Os03g21110
OsAffx.12964.1.S1_at--748--4871Chr03:12000078..12000102 (25 bp)
GCTATCGCTGGCAGTTTGCGTTGGA
LOC_Os03g21110
Target Sequence 
ATTGTCTCCATCGACGTGCAGTGGACCACCGAAGTCCGCGACCACGCCGGTGGTGCCGGCTCCCCGCCAGCCGTCGCAGC
CGCCAAGGAAGGCCACATCGATTGTGTACAGGTGATTTTGATGTTTCACTTCATTGTAATTCACACAAGCATAATGGGGA
TTAGGAATGTAGATGCACACGCTTCTTCGATGATTGGAGAGTTGAAGAAATTGGAGGTTTCTACTCGGCTCATACATGAA
GAGATGATTTCTCTCCGACGGAGCGAGGGTGAGATGCAAAAGCTCAACGAAGACACGACCATGAAAATACACTCGTTCAC
CCTGCTATCGCTGGCAGTTTGCGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis