Browse Element(s) Details


Os.49095.1.S1_at

Description gb:AK102616.1
DB_XREF= gi:32987825
TID=Os.49095.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099F01, full insert sequence.
FL= gb:AK102616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2114011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21140Os.49095.1.S1_at11/113+12025846..12029933Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g21160Os.49664.1.S1_at10/113+12046908..12050726RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49095.1.S1_at--209--2331Chr03:12028641..12028665 (25 bp)
AAAGTTTCACCACCACTGATACCGG
LOC_Os03g21140
Os.49095.1.S1_at--596--8711Chr03:12028666..12028690 (25 bp)
TGTCGTCGCGACAAGTAGCTGCAGT
LOC_Os03g21140
Os.49095.1.S1_at--225--4771Chr03:12028683..12028707 (25 bp)
GCTGCAGTGCATCTCATGTAGGCAT
LOC_Os03g21140
Os.49095.1.S1_at--396--751Chr03:12028698..12028722 (25 bp)
ATGTAGGCATCAGCGCGGGCACTAA
LOC_Os03g21140
Os.49095.1.S1_at--125--6151Chr03:12028728..12028752 (25 bp)
GAGGTGGAATCAACCATCTGCGGCC
LOC_Os03g21140
Os.49095.1.S1_at--760--8391Chr03:12028749..12028773 (25 bp)
GGCCCTCTACTTTGGATATACCTTC
LOC_Os03g21140
Os.49095.1.S1_at--903--10171Chr03:12028765..12028789 (25 bp)
TATACCTTCGCCAAGAGACTTCTTC
LOC_Os03g21140
Os.49095.1.S1_at--907--8451Chr03:12028886..12028910 (25 bp)
TGGCCTCTGATCACGGAGCGATTGG
LOC_Os03g21140
Os.49095.1.S1_at--594--7451Chr03:12029130..12029154 (25 bp)
GTGTCAGCATAGTGTTAGCTCCCTT
LOC_Os03g21140
Os.49095.1.S1_at--347--6691Chr03:12029170..12029194 (25 bp)
GTTGCCCTTTTTAGTGGGTAGCTCT
LOC_Os03g21140
Os.49095.1.S1_at--1039--6791Chr03:12029374..12029399 (25 bp)
GTTTACCCAGTTGTCATCTAAGTTG
LOC_Os03g21140
Target Sequence 
AAAGTTTCACCACCACTGATACCGGTGTCGTCGCGACAAGTAGCTGCAGTGCATCTCATGTAGGCATCAGCGCGGGCACT
AATGCTGGAGGTGGAATCAACCATCTGCGGCCCTCTACTTTGGATATACCTTCGCCAAGAGACTTCTTCTCGGTTTCCAG
GCTGGCCTCTGATCACGGAGCGATTGGGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAGAAC
ACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTGAAGTGTCAGCATAGTGTTAGCTCCCTTNTTTA
TTTCTTTTTGGTTGCCCTTTTTAGTGGGTAGCTCTATTAAAACCACAAGTGAAGATGCCATTAGCCTTTNGACTAGGAAA
AAANNGCCAGTAGATGCAGACATGCAGTGTTGTGAGATACTTAATATATATAAGCAATCCAGTGTTACCCCCTTATAATA
TTAGATATACTAGNAGTACTCAATTACAACTGNCATCAACNACATATATAGNTGATGTTTACCCAGTTGTCATCTAAGTT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis