Browse Element(s) Details


Os.49664.1.S1_at

Description gb:AK064318.1
DB_XREF= gi:32974336
TID=Os.49664.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-D03, full insert sequence.
FL= gb:AK064318.1 gb:AK102918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2116010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21140Os.49095.1.S1_at11/113+12025846..12029933Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g21160Os.49664.1.S1_at10/113+12046908..12050726RNA recognition motif family protein, expressed
LOC_Os03g21170NANA3+12057080..12058026hypothetical protein
LOC_Os03g21180NANA3+12059792..12065944retrotransposon protein, putative, unclassified
LOC_Os03g21190Os.31312.5.S1_x_at3/113+12066606..12069829retrotransposon protein, putative, unclassified
LOC_Os03g21190Os.28943.1.S1_x_at1/113+12066606..12069829retrotransposon protein, putative, unclassified
LOC_Os03g21190Os.31312.2.S1_x_at1/113+12066606..12069829retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49664.1.S1_at--527--2951Chr03:12050161..12050185 (25 bp)
AATGGAAGTGGCTGAAACCCTCTCC
LOC_Os03g21160
Os.49664.1.S1_at--592--5551NONE
GAAACCCTCTCCAGAAATCATAGAA
NONE
Os.49664.1.S1_at--23--6131Chr03:12050349..12050373 (25 bp)
GAGTGGAGTGTCAGCGTAGTTTTTA
LOC_Os03g21160
Os.49664.1.S1_at--767--10331Chr03:12050370..12050394 (25 bp)
TTTAGGATGTTTAGCTCCCCTTTCT
LOC_Os03g21160
Os.49664.1.S1_at--150--10311Chr03:12050395..12050419 (25 bp)
TTTCGTTTTTAAGCTTCTCTCACCT
LOC_Os03g21160
Os.49664.1.S1_at--873--9791Chr03:12050404..12050428 (25 bp)
TAAGCTTCTCTCACCTTTTAGTGGA
LOC_Os03g21160
Os.49664.1.S1_at--71--8571Chr03:12050425..12050449 (25 bp)
TGGATAGCTCCATTAAACAACACGA
LOC_Os03g21160
Os.49664.1.S1_at--454--2771Chr03:12050457..12050481 (25 bp)
AAGATGCCATTAGCCCTTATGGAAG
LOC_Os03g21160
Os.49664.1.S1_at--830--1091Chr03:12050556..12050580 (25 bp)
AGTGGTGCGCCTAATTATACTAGAG
LOC_Os03g21160
Os.49664.1.S1_at--512--10771Chr03:12050637..12050661 (25 bp)
TTGATGTTGTTACCCAGTTCTTCCA
LOC_Os03g21160
Os.49664.1.S1_at--529--111Chr03:12050691..12050715 (25 bp)
ATTCTGTGGTTAATCCTGGAGGCAA
LOC_Os03g21160
Target Sequence 
AATGGAAGTGGCTGAAACCCTCTCCAGAAATCATAGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAA
AGGAGTGGAGTGTCAGCGTAGTTTTTAGGATGTTTAGCTCCCCTTTCTTTTCGTTTTTAAGCTTCTCTCACCTTTTAGTG
GATAGCTCCATTAAACAACACGAGAAGAAGAAGATGCCATTAGCCCTTATGGAAGAAAAAGTGGCAGCATATGAAGTATT
GTGATATACTACTATATATAATACTACTCTATATATATATAAATAATTTAGTGGTGCGCCTAATTATACTAGAGAATATA
GTACTATGTGGCAGTTAGCAGTTATTTTGTTTACTACTGCCATCAGACAATTGATGTTGTTACCCAGTTCTTCCATGTAT
AACAACTACTCGTATATTATACTGATTCTGTGGTTAATCCTGGAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis