Browse Element(s) Details


Os.27926.1.A1_s_at

Description gb:CB965121
DB_XREF= gi:30227229
DB_XREF=NL16_E09
CLONE=NL16_E09
TID=Os.27926.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27926 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565899.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4846011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27926.1.A1_s_at--1047--5631Chr07:28992332..28992571 (25 bp)
GACAGAGCCACCCTGTTAGGCTGGT
LOC_Os07g48460
Os.27926.1.A1_s_at--746--6371Chr07:28992776..28992882 (25 bp)
GATCCTCCCCTGGTAAATCGAGAGA
LOC_Os07g48460
Os.27926.1.A1_s_at--247--5831Chr07:28992881..28992905 (25 bp)
GACCGTCAACAAAAGCATCGATCGA
LOC_Os07g48460
Os.27926.1.A1_s_at--462--9391Chr07:28992898..28992922 (25 bp)
TCGATCGATCCGTCACCTGTGCTTG
LOC_Os07g48460
Os.27926.1.A1_s_at--601--1772Chr07:28992912..28992936 (25 bp)
ACCTGTGCTTGCATTTGGCACTGTT
LOC_Os07g48460
Os.27926.1.A1_s_at--708--3571Chr07:28992923..28992947 (25 bp)
CATTTGGCACTGTTCGAGTTCGACC
LOC_Os07g48460
Os.27926.1.A1_s_at--359--651Chr07:28992948..28992972 (25 bp)
ATGCATGCATGTCGTGTTACTGTTG
LOC_Os07g48460
Os.27926.1.A1_s_at--737--9051Chr07:28992953..28992977 (25 bp)
TGCATGTCGTGTTACTGTTGCGTGT
LOC_Os07g48460
Os.27926.1.A1_s_at--1045--2251Chr07:28993002..28993026 (25 bp)
AAATCAGGGTCTCGCTGTCAGCAGA
LOC_Os07g48460
Os.27926.1.A1_s_at--18--7751Chr07:28993054..28993078 (25 bp)
GGTGTGGATCCATGCGTATATGCGC
LOC_Os07g48460
Os.27926.1.A1_s_at--468--6891Chr07:28993069..28993093 (25 bp)
GTATATGCGCATCTTTTGTACGAAG
LOC_Os07g48460
Target Sequence 
GACAGAGCCACCCTGTTAGGCTGGTGCCATACAACCCGGAGTACCTGGACGAGTCGGTGCTGTGGACGGAGAGCAAGGAC
GTCGGCCATGGCTTCCGCTGCGTCCGCATGGTGAACAACATCTACCTCAACTTTGACGCCTTCCATGGCGACAAGGACCA
CGGCGGCGTCCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGTAAGGGCGACAACCAGCGCTGGAAGATCCTCCCCT
GGTAAATCGAGAGACCGTCAACAAAAGCATCGATCGATCCGTCACCTGTGCTTGCATTTGGCACTGTTCGAGTTCGACCA
TGCATGCATGTCGTGTTACTGTTGCGTGTCCTGTGTTNATGTCACTGCAGAATAAATCAGGGTCTCGCTGTCAGCAGAGA
TCAGATGGCCCCCTCCCTGCTGTTTGGTGTGGATCCATGCGTATATGCGCATCTTTTGTACGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27926.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis