Browse Element(s) Details


Os.12809.1.S1_s_at

Description gb:AK060899.1
DB_XREF= gi:32970917
TID=Os.12809.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D04, full insert sequence.
FL= gb:AK060899.1 gb:AK103324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4849011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed
LOC_Os07g48520NANA7+29022904..29023547hypothetical protein
LOC_Os07g48540NANA7+29028443..29028881hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12809.1.S1_s_at--596--7751Chr07:29003770..29003794 (25 bp)
GGTGAAGCTGGTTCCCTACAACCCA
LOC_Os07g48490
Os.12809.1.S1_s_at--817--851Chr07:29003931..29003955 (25 bp)
ATGGCACCGAGATCGTGCTGTGGAA
LOC_Os07g48490
Os.12809.1.S1_s_at--551--2011Chr07:29004175..29004199 (25 bp)
ACTCTAGCTAATAATTTGATCGATC
LOC_Os07g48490
Os.12809.1.S1_s_at--918--3111Chr07:29004187..29004211 (25 bp)
AATTTGATCGATCTGCTACCGAAAT
LOC_Os07g48490
Os.12809.1.S1_s_at--851--6391Chr07:29004192..29004216 (25 bp)
GATCGATCTGCTACCGAAATAAGAC
LOC_Os07g48490
Os.12809.1.S1_s_at--95--9491Chr07:29004198..29004222 (25 bp)
TCTGCTACCGAAATAAGACCGTGTT
LOC_Os07g48490
Os.12809.1.S1_s_at--664--4831Chr07:29004201..29004225 (25 bp)
GCTACCGAAATAAGACCGTGTTCGT
LOC_Os07g48490
Os.12809.1.S1_s_at--1039--3991Chr07:29004248..29004272 (25 bp)
GCAGTCAATGGTGTCCGTCCGTCCT
LOC_Os07g48490
Os.12809.1.S1_s_at--1041--2951Chr07:29004254..29004278 (25 bp)
AATGGTGTCCGTCCGTCCTCGAGTT
LOC_Os07g48490
Os.12809.1.S1_s_at--660--9271Chr07:29004261..29004285 (25 bp)
TCCGTCCGTCCTCGAGTTTGTGTCA
LOC_Os07g48490
Os.12809.1.S1_s_at--323--4871Chr07:29004314..29004338 (25 bp)
GCTATGAGATGAAACAGTGGGTGAT
LOC_Os07g48490
Target Sequence 
GGTGAAGCTGGTTCCCTACAACCCAGAGTACCAGGACGAGTCTGTGCTGTGGACGGAGAGCAAGGATGTGGGCAAGGGCT
TCCGCTGCATCCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTTCCATGGCGACAAGGATCACGGCGGCATCCAC
GATGGCACCGAGATCGTGCTGTGGAAGTGGTGCGAGGGTGACAACCAGCGCTGGAAGATCCTCCCCTGGTAGATTCCGGG
GAGGGGGAGCTGCATTGCATTGCCATCGTCGTCGCGTCTGCTCTGCTTCTACTCTAGCTAATAATTTGATCGATCTGCTA
CCGAAATAAGACCGTGTTCGTTCGTTCGATCGATCGGAGTATGGCAGTCAATGGTGTCCGTCCGTCCTCGAGTTTGTGTC
AGTGTGTGTCCTTTTGCGAGCCAGTGATTGCTATGAGATGAAACAGTGGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12809.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis