Browse Element(s) Details


OsAffx.28955.1.S1_at

Description tigr:9635.m04893
TID=OsAffx.28955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4848011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed
LOC_Os07g48520NANA7+29022904..29023547hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28955.1.S1_at--484--1831Chr07:28998808..28998832 (25 bp)
ACGCGATGGTGCTGAGGCGATTCTT
LOC_Os07g48480
OsAffx.28955.1.S1_at--991--4691Chr07:28998818..28998842 (25 bp)
GCTGAGGCGATTCTTGTTGGGCGGA
LOC_Os07g48480
OsAffx.28955.1.S1_at--962--8391Chr07:28998853..28998877 (25 bp)
GGCGCTGGCTTGGTCAACACGCGAA
LOC_Os07g48480
OsAffx.28955.1.S1_at--1102--4691Chr07:28998856..28998880 (25 bp)
GCTGGCTTGGTCAACACGCGAAGGC
LOC_Os07g48480
OsAffx.28955.1.S1_at--640--8491Chr07:28998858..28998882 (25 bp)
TGGCTTGGTCAACACGCGAAGGCAA
LOC_Os07g48480
OsAffx.28955.1.S1_at--927--4931Chr07:28998860..28998884 (25 bp)
GCTTGGTCAACACGCGAAGGCAAGA
LOC_Os07g48480
OsAffx.28955.1.S1_at--404--8591Chr07:28998863..28998887 (25 bp)
TGGTCAACACGCGAAGGCAAGAAGA
LOC_Os07g48480
OsAffx.28955.1.S1_at--184--9691Chr07:28998866..28998890 (25 bp)
TCAACACGCGAAGGCAAGAAGAAGC
LOC_Os07g48480
OsAffx.28955.1.S1_at--7--3991Chr07:28998890..28998914 (25 bp)
CGGGTGACGGCGACGCAACAACCAA
LOC_Os07g48480
OsAffx.28955.1.S1_at--414--8951Chr07:28998894..28998918 (25 bp)
TGACGGCGACGCAACAACCAAAAGG
LOC_Os07g48480
OsAffx.28955.1.S1_at--252--4571Chr07:28998899..28998923 (25 bp)
GCGACGCAACAACCAAAAGGCCGGG
LOC_Os07g48480
Target Sequence 
ACGCGATGGTGCTGAGGCGATTCTTGTTGGGCGGAGGGGGAGGGGGGCGCTGGCTTGGTCAACACGCGAAGGCAAGAAGA
AGCGGGTGACGGCGACGCAACAACCAAAAGGCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis