Browse Element(s) Details


Os.12072.1.S1_at

Description gb:AU095396
DB_XREF= gi:8858078
DB_XREF=AU095396
CLONE=E61778
TID=Os.12072.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12072 (NCBI UniGene Cluster)
UG_TITLE=O.sativa osr40g3 gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4850011/11stress responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed
LOC_Os07g48520NANA7+29022904..29023547hypothetical protein
LOC_Os07g48540NANA7+29028443..29028881hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12072.1.S1_at--421--1171Chr07:29007650..29007674 (25 bp)
AGTCACACCCTGTAAGCTAGTCTCA
LOC_Os07g48500
Os.12072.1.S1_at--88--2171Chr07:29007654..29007678 (25 bp)
ACACCCTGTAAGCTAGTCTCAGCGT
LOC_Os07g48500
Os.12072.1.S1_at--952--7051Chr07:29007661..29007685 (25 bp)
GTAAGCTAGTCTCAGCGTTCTTTCT
LOC_Os07g48500
Os.12072.1.S1_at--364--10071Chr07:29007667..29007691 (25 bp)
TAGTCTCAGCGTTCTTTCTCTGAAT
LOC_Os07g48500
Os.12072.1.S1_at--288--3391Chr07:29007673..29007697 (25 bp)
CAGCGTTCTTTCTCTGAATCTGAAT
LOC_Os07g48500
Os.12072.1.S1_at--360--6731Chr07:29007677..29007701 (25 bp)
GTTCTTTCTCTGAATCTGAATCCGC
LOC_Os07g48500
Os.12072.1.S1_at--164--10311Chr07:29007681..29007705 (25 bp)
TTTCTCTGAATCTGAATCCGCCGGC
LOC_Os07g48500
Os.12072.1.S1_at--761--9451Chr07:29007685..29007709 (25 bp)
TCTGAATCTGAATCCGCCGGCCATT
LOC_Os07g48500
Os.12072.1.S1_at--417--5251Chr07:29007694..29007718 (25 bp)
GAATCCGCCGGCCATTGATGGCGAT
LOC_Os07g48500
Os.12072.1.S1_at--1047--4471Chr07:29007700..29007724 (25 bp)
GCCGGCCATTGATGGCGATCGACGA
LOC_Os07g48500
Os.12072.1.S1_at--453--5771Chr07:29007723..29007747 (25 bp)
GACGATGCTCTTGCGTGCAGGTGAG
LOC_Os07g48500
Target Sequence 
AGTCACACCCTGTAAGCTAGTCTCAGCGTTCTTTCTCTGAATCTGAATCCGCCGGCCATTGATGGCGATCGACGACGATG
CTCTTGCGTGCAGGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis