Browse Element(s) Details


Os.48976.1.A1_s_at

Description gb:CR292091
DB_XREF= gi:44678657
DB_XREF=CR292091
CLONE=y836c03p3
TID=Os.48976.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48976 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4850011/11stress responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed
LOC_Os07g48520NANA7+29022904..29023547hypothetical protein
LOC_Os07g48540NANA7+29028443..29028881hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48976.1.A1_s_at--986--3911Chr07:29007904..29007928 (25 bp)
CGGCACCGACATCGTGCTCTGGAAG
LOC_Os07g48500
Os.48976.1.A1_s_at--497--3891Chr07:29007952..29007976 (25 bp)
CTGGAAGATCCAGCCCTACTACTGA
LOC_Os07g48500
Os.48976.1.A1_s_at--581--1291Chr07:29007957..29007981 (25 bp)
AGATCCAGCCCTACTACTGAGCTGA
LOC_Os07g48500
Os.48976.1.A1_s_at--135--4551Chr07:29007964..29007988 (25 bp)
GCCCTACTACTGAGCTGATCGATAC
LOC_Os07g48500
Os.48976.1.A1_s_at--184--2031Chr07:29007969..29007993 (25 bp)
ACTACTGAGCTGATCGATACATCGA
LOC_Os07g48500
Os.48976.1.A1_s_at--677--511Chr07:29007981..29008005 (25 bp)
ATCGATACATCGATCCAGCTCTCTA
LOC_Os07g48500
Os.48976.1.A1_s_at--915--6471Chr07:29007984..29008008 (25 bp)
GATACATCGATCCAGCTCTCTATCA
LOC_Os07g48500
Os.48976.1.A1_s_at--224--7051Chr07:29008087..29008111 (25 bp)
GTAACTTATGCTCGTCCGTACCGTA
LOC_Os07g48500
Os.48976.1.A1_s_at--131--631Chr07:29008094..29008118 (25 bp)
ATGCTCGTCCGTACCGTATGATTAT
LOC_Os07g48500
Os.48976.1.A1_s_at--64--4011Chr07:29008099..29008123 (25 bp)
CGTCCGTACCGTATGATTATCGTGT
LOC_Os07g48500
Os.48976.1.A1_s_at--520--6911Chr07:29008109..29008133 (25 bp)
GTATGATTATCGTGTGGTGTGCTTG
LOC_Os07g48500
Target Sequence 
CGGCACCGACATCGTGCTCTGGAAGTGGTGCGAGGGCGACAACCAGCGTCTGGAAGATCCAGCCCTACTACTGAGCTGAT
CGATACATCGATCCAGCTCTCTATCAAGGCTCAAGTTGATATCANCGAATCTGGTNCAGAATAATTATTCTCTGCTAGCT
ACCCACNTACTCCGTATATACGTAGCTAAGAGTAACTTATGCTCGTCCGTACCGTATGATTATCGTGTGGTGTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48976.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis