Browse Element(s) Details


Os.18595.1.A1_at

Description gb:AK068606.1
DB_XREF= gi:32978623
TID=Os.18595.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.18595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157G23, full insert sequence.
FL= gb:AK068606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4845011/11NAC-domain containing protein 18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18595.1.A1_at--112--9711Chr07:28985720..28985744 (25 bp)
TCAACGGCTCATGCTTCGACGTGGC
LOC_Os07g48450
Os.18595.1.A1_at--992--4911Chr07:28985814..28985838 (25 bp)
GCTTCCTCCTCAGCTATTCTGAATA
LOC_Os07g48450
Os.18595.1.A1_at--811--2531Chr07:28985846..28985870 (25 bp)
AACTAGCTTAATTAATGGCCATGGA
LOC_Os07g48450
Os.18595.1.A1_at--57--2611Chr07:28985880..28985904 (25 bp)
AACGCAGTCGATCGAATTTACGGAT
LOC_Os07g48450
Os.18595.1.A1_at--1162--171Chr07:28985895..28985919 (25 bp)
ATTTACGGATGCTACGTACTGGCAT
LOC_Os07g48450
Os.18595.1.A1_at--614--4991Chr07:28985916..28985940 (25 bp)
GCATGAACAATCTTGCCGACGATAT
LOC_Os07g48450
Os.18595.1.A1_at--124--9931Chr07:28986040..28986064 (25 bp)
TACGTATTCATTTCAGGCACAGTGC
LOC_Os07g48450
Os.18595.1.A1_at--312--5871Chr07:28986077..28986101 (25 bp)
GAGCCTTGATAGTACTTTACACCGT
LOC_Os07g48450
Os.18595.1.A1_at--39--7011Chr07:28986088..28986112 (25 bp)
GTACTTTACACCGTAGAGAGGGAAT
LOC_Os07g48450
Os.18595.1.A1_at--502--3091Chr07:28986150..28986174 (25 bp)
AATACTTTACTGTAGCCAATTGATA
LOC_Os07g48450
Os.18595.1.A1_at--255--3011Chr07:28986208..28986232 (25 bp)
AATGCAATAGATTCTGGCTCTGATC
LOC_Os07g48450
Target Sequence 
TCAACGGCTCATGCTTCGACGTGGCGCCGCAGTCCGTGGTGGGCGGCTTGCAAGCGACGCCGTCGTCAGTCCTCGCCGGA
CTCAACCACCAGATGCTTCCTCCTCAGCTATTCTGAATATATTCTTAACTAGCTTAATTAATGGCCATGGAAATCGATCA
AACGCAGTCGATCGAATTTACGGATGCTACGTACTGGCATGAACAATCTTGCCGACGATATTAAGATCGGATGGAAGCAT
GGACGACGATGATGATTGGGGTACGGTATAGAATTATTGTAGTATTGAACAATTAGGCATTTGTATGCGATTTTTTNTCC
TACGTATTCATTTCAGGCACAGTGCAAAAGCAAGCTGGAGCCTTGATAGTACTTTACACCGTAGAGAGGGAATGTTGTAC
AATTAAAGATTACTAGATATACAGAACAATAATACTTTACTGTAGCCAATTGATATACTACTAGTATACAGGATTGTAGA
AGATATCAAATGCAATAGATTCTGGCTCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18595.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis