Browse Element(s) Details


Os.50966.1.S1_at

Description gb:AK059817.1
DB_XREF= gi:32969835
TID=Os.50966.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C02, full insert sequence.
FL= gb:AK059817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3298011/11Germin-like protein subfamily 3 member 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32960OsAffx.28970.3.S1_x_at11/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.4.S1_at7/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_x_at2/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_at1/112+19578621..19579323hypothetical protein
LOC_Os02g32970Os.55369.1.S1_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32970Os.17164.1.S1_s_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32980Os.50966.1.S1_at11/112+19591678..19592747Germin-like protein subfamily 3 member 2 precursor, putative, expressed
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50966.1.S1_at--691--9371Chr02:19591987..19592011 (25 bp)
TCGAGAGGGCGTTCGGGCTCACTCC
LOC_Os02g32980
Os.50966.1.S1_at--629--8531Chr02:19591945..19591969 (25 bp)
TGGAGAAGAGGTTCGGCCCGCCCAA
LOC_Os02g32980
Os.50966.1.S1_at--459--6031Chr02:19591913..19591937 (25 bp)
GAGATGGAGGATTAGCTAGCCGCTT
LOC_Os02g32980
Os.50966.1.S1_at--232--151Chr02:19591903..19591927 (25 bp)
ATTAGCTAGCCGCTTGTGCTTGACC
LOC_Os02g32980
Os.50966.1.S1_at--41--9431Chr02:19591867..19591891 (25 bp)
TCGGTCGTGGGCATGATTAGGTTAC
LOC_Os02g32980
Os.50966.1.S1_at--1079--4971Chr02:19591857..19591881 (25 bp)
GCATGATTAGGTTACTCCCCGTTAG
LOC_Os02g32980
Os.50966.1.S1_at--401--9911Chr02:19591845..19591869 (25 bp)
TACTCCCCGTTAGTGATAATTAATG
LOC_Os02g32980
Os.50966.1.S1_at--642--2951Chr02:19591824..19591848 (25 bp)
AATGGGTTATTTCTTTTCATTTCAT
LOC_Os02g32980
Os.50966.1.S1_at--628--3451Chr02:19591789..19591813 (25 bp)
CAGTACTGTATCATTTGTGGCGGTG
LOC_Os02g32980
Os.50966.1.S1_at--800--8151Chr02:19591760..19591784 (25 bp)
GGAAATGGTGATTATAGCCTGGTAA
LOC_Os02g32980
Os.50966.1.S1_at--879--2211Chr02:19591682..19591706 (25 bp)
ACAATCGAGAGGGTAACTCAACTTC
LOC_Os02g32980
Target Sequence 
TCGAGAGGGCGTTCGGGCTCACTCCGGCGGAGCTCCGGCGGCTGGAGAAGAGGTTCGGCCCGCCCAAGAAGGCGGAGATG
GAGGATTAGCTAGCCGCTTGTGCTTGACCGGCCATGGCCGTCGGTCGTGGGCATGATTAGGTTACTCCCCGTTAGTGATA
ATTAATGGGTTATTTCTTTTCATTTCATTTGGTTAATACAGTACTGTATCATTTGTGGCGGTGGTTGGGAAATGGTGATT
ATAGCCTGGTAATGATTTGAGGTGTAAGGTTGGTAGAGATGTATAAGGAGGCANNGATGAATGGAACAATCGAGAGGGTA
ACTCAACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis