Browse Element(s) Details


Os.53440.1.S1_at

Description gb:AK073663.1
DB_XREF= gi:32983686
TID=Os.53440.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046A21, full insert sequence.
FL= gb:AK073663.1 gb:AK072635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3300010/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32970Os.55369.1.S1_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32970Os.17164.1.S1_s_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32980Os.50966.1.S1_at11/112+19591678..19592747Germin-like protein subfamily 3 member 2 precursor, putative, expressed
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53440.1.S1_at--1127--4171Chr02:19616237..19616261 (25 bp)
CCCATGGCATCACACGAGGCAGCGA
LOC_Os02g33000
Os.53440.1.S1_at--1157--6191NONE
GAGGCAGCGACCCAGGTGATCCATT
NONE
Os.53440.1.S1_at--974--7391Chr02:19617004..19617028 (25 bp)
GTGATCCATTGGTTCCTACTTATCG
LOC_Os02g33000
Os.53440.1.S1_at--364--1791Chr02:19617031..19617055 (25 bp)
ACCGCATCGGTCGTTTTCGCCTTAT
LOC_Os02g33000
Os.53440.1.S1_at--374--10291Chr02:19617045..19617069 (25 bp)
TTTCGCCTTATCGTGACAGTATCAG
LOC_Os02g33000
Os.53440.1.S1_at--971--6891Chr02:19617063..19617087 (25 bp)
GTATCAGCCACTGTACTTAGTGAGT
LOC_Os02g33000
Os.53440.1.S1_at--437--7351Chr02:19617082..19617106 (25 bp)
GTGAGTCGTGACAACTGCAGTTAAC
LOC_Os02g33000
Os.53440.1.S1_at--652--3851Chr02:19617125..19617149 (25 bp)
CTGAAAATGGCTTCGCAGTGATATT
LOC_Os02g33000
Os.53440.1.S1_at--401--2331Chr02:19617181..19617205 (25 bp)
AAAGTATTAACCCACCAGGCTTGCA
LOC_Os02g33000
Os.53440.1.S1_at--744--9191Chr02:19617207..19617231 (25 bp)
TGCCTTTCGTCTTACAGTGTTACAG
LOC_Os02g33000
Os.53440.1.S1_at--536--2671Chr02:19617292..19617316 (25 bp)
AAGCGTATCACATTCTTTTGGGATT
LOC_Os02g33000
Target Sequence 
CCCATGGCATCACACGAGGCAGCGACCCAGGTGATCCATTGGTTCCTACTTATCGCCACCGCATCGGTCGTTTTCGCCTT
ATCGTGACAGTATCAGCCACTGTACTTAGTGAGTCGTGACAACTGCAGTTAACGGGGGTGCCATTCAGAAGCTGAAAATG
GCTTCGCAGTGATATTAGATTAGAGGATAGATCTAACAGAAATTTGGAAAGTATTAACCCACCAGGCTTGCACTGCCTTT
CGTCTTACAGTGTTACAGAGGAAGAGTCATACAGAAGAATTGTCATTGGTCGATAATACATAGCNAATCATCAGTTGTAA
GCGTATCACATTCTTTTGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis