Browse Element(s) Details


Os.7691.1.S1_s_at

Description gb:AU101809
DB_XREF= gi:9866059
DB_XREF=AU101809
CLONE=S15055
TID=Os.7691.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7691 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568129.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3301011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32980Os.50966.1.S1_at11/112+19591678..19592747Germin-like protein subfamily 3 member 2 precursor, putative, expressed
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7691.1.S1_s_at--810--5591Chr02:19617893..19617917 (25 bp)
GAAATACTTGGCTTTCATGCTATCC
LOC_Os02g33010
Os.7691.1.S1_s_at--786--631Chr02:19617877..19617901 (25 bp)
ATGCTATCCCTTCATGGTCCTTTGG
LOC_Os02g33010
Os.7691.1.S1_s_at--31--9251Chr02:19617860..19617884 (25 bp)
TCCTTTGGTCTGCTTGGATGGTCAT
LOC_Os02g33010
Os.7691.1.S1_s_at--355--3571Chr02:19617792..19617816 (25 bp)
CATTAAATCAAGTGGCGCAACGTCT
LOC_Os02g33010
Os.7691.1.S1_s_at--711--8391Chr02:19617779..19617803 (25 bp)
GGCGCAACGTCTAACTGGACTGGAT
LOC_Os02g33010
Os.7691.1.S1_s_at--626--8531Chr02:19617764..19617788 (25 bp)
TGGACTGGATGGTTCTGACACCCAT
LOC_Os02g33010
Os.7691.1.S1_s_at--16--8971Chr02:19617749..19617773 (25 bp)
TGACACCCATTGATAGGCGCGCACT
LOC_Os02g33010
Os.7691.1.S1_s_at--958--8391Chr02:19617734..19617758 (25 bp)
GGCGCGCACTATTTCGACCTTGAAA
LOC_Os02g33010
Os.7691.1.S1_s_at--184--4951Chr02:19617683..19617707 (25 bp)
GCATTGATCAAGGTCTGCAGCTGAT
LOC_Os02g33010
Os.7691.1.S1_s_at--615--6751Chr02:19617588..19617612 (25 bp)
GTTCAGAATTCGACATGGGTACCAG
LOC_Os02g33010
Os.7691.1.S1_s_at--778--8631Chr02:19617573..19617597 (25 bp)
TGGGTACCAGGGACCATTCTTTATG
LOC_Os02g33010
Target Sequence 
GAAATACTTGGCTTTCATGCTATCCCTTCATGGTCCTTTGGTCTGCTTGGATGGTCATTTTTATCAGCATCCAATTGATT
GGTGGATATATCTGACTAAACCATTAAATCAAGTGGCGCAACGTCTAACTGGACTGGATGGTTCTGACACCCATTGATAG
GCGCGCACTATTTCGACCTTGAAATTTTTGTGTAAACTGTTAGTCAATTTGCATTGATCAAGGTCTGCAGCTGATGTACA
TATCTGTAACGTTTAGCAGCATATTTGTATAGGTAGTTCAGTGCACAGGAGCAGTGAACCACAAAGTTCAGAATTCGACA
TGGGTACCAGGGACCATTCTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7691.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis