Browse Element(s) Details


Os.9283.1.S1_at

Description gb:AK121139.1
DB_XREF= gi:37990762
TID=Os.9283.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077F13, full insert sequence.
FL= gb:AK121139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g330702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042030molecular_functionATPase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9283.1.S1_at--406--4851Chr02:19643369..19643393 (25 bp)
GCTACTTCAGCGACGGCACCGGCAG
LOC_Os02g33070
Os.9283.1.S1_at--535--4211Chr02:19643323..19643345 (23 bp)
CCGCCGAGAGCGTCTACATACAGAA
LOC_Os02g33070
Os.9283.1.S1_at--964--6371Chr02:19642955..19642979 (25 bp)
GATCCGCTGGGTGACAGTGAAACTG
NONE
Os.9283.1.S1_at--515--371Chr02:19642927..19642951 (25 bp)
ATCAATCACACGATCCGGTGCTGGT
NONE
Os.9283.1.S1_at--865--3011Chr02:19642892..19642916 (25 bp)
AATGCTTCTGATATGTTGATTCGCA
NONE
Os.9283.1.S1_at--961--6551Chr02:19642875..19642899 (25 bp)
GATTCGCAGATACTAGTAGCTAAGT
NONE
Os.9283.1.S1_at--1086--2251Chr02:19642807..19642831 (25 bp)
AAATAAATAACAGCATGCCCCTGGG
NONE
Os.9283.1.S1_at--41--7631Chr02:19642735..19642759 (25 bp)
GGGAAATGTACCTGCTTGTGTTGTG
NONE
Os.9283.1.S1_at--835--4931Chr02:19642722..19642746 (25 bp)
GCTTGTGTTGTGACGCATCATATAT
NONE
Os.9283.1.S1_at--2--4431Chr02:19642697..19642721 (25 bp)
GCCAGTGTAAATTCCAGATGTCTTT
NONE
Os.9283.1.S1_at--685--1311Chr02:19642682..19642706 (25 bp)
AGATGTCTTTTTCGAACTTGTGTGA
NONE
Target Sequence 
GCTACTTCAGCGACGGCACCGGCAGGGTGCTCAGCGAGGAGGAGCGCGCCGCCGAGAGCGTCTACATACAGAAGATGGAG
AGGGAGAAGCTGGAGAAGGAGAGGAGGAAGGCGGACAAGGACAAGGCCGATGCAGCGAAGAGGGCGGCCGCCGCCAAAGG
GGATAAGAAGGGCGGGGAAGCTCGCCCAACCTGATCCGCTGGGTGACAGTGAAACTGATGATCAATCACACGATCCGGTG
CTGGTGTTCTGTTTGAATGCTTCTGATATGTTGATTCGCAGATACTAGTAGCTAAGTACTCTTTTAAAGTTTTTTTCTGT
ACAGTGGGAAAGGAGTCAAGAAATAAATAACAGCATGCCCCTGGGGTGTGTTTATTTTACTGATGTGAATTAGTAGGAGC
TACTCTGTAAAAGGGAAATGTACCTGCTTGTGTTGTGACGCATCATATATGCCAGTGTAAATTCCAGATGTCTTTTTCGA
ACTTGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis