Browse Element(s) Details


OsAffx.12920.1.S1_at

Description tigr:9631.m01822
TID=OsAffx.12920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1849011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12920.1.S1_at--34--8911Chr03:10346386..10346410 (25 bp)
TGAGAATGTGGTTGCTGCTTCTGGT
LOC_Os03g18490
OsAffx.12920.1.S1_at--239--911Chr03:10346668..10346692 (25 bp)
AGGCTGGGATTCTGAGCACCGTCGC
LOC_Os03g18490
OsAffx.12920.1.S1_at--644--5091Chr03:10346683..10346707 (25 bp)
GCACCGTCGCTTCCAAGATTGGCAT
LOC_Os03g18490
OsAffx.12920.1.S1_at--945--8271Chr03:10346703..10346727 (25 bp)
GGCATCGCCATGTCCGGTGCTGATG
LOC_Os03g18490
OsAffx.12920.1.S1_at--277--8871Chr03:10346723..10346747 (25 bp)
TGATGGCCGCGAGAACCACGGCAAC
LOC_Os03g18490
OsAffx.12920.1.S1_at--860--3251Chr03:10346744..10346768 (25 bp)
CAACGAGGACGATGCTAAGATCAGA
LOC_Os03g18490
OsAffx.12920.1.S1_at--105--2811Chr03:10346760..10346784 (25 bp)
AAGATCAGAAATGGCAACGCTGCTG
LOC_Os03g18490
OsAffx.12920.1.S1_at--137--2611Chr03:10346775..10346799 (25 bp)
AACGCTGCTGACCATGGCAAGGCTG
LOC_Os03g18490
OsAffx.12920.1.S1_at--426--5391Chr03:10346837..10346861 (25 bp)
GAAGCAGATCATGTCAAACCTCCCT
LOC_Os03g18490
OsAffx.12920.1.S1_at--691--8731Chr03:10346848..10347025 (25 bp)
TGTCAAACCTCCCTGCAGATGATCA
LOC_Os03g18490
OsAffx.12920.1.S1_at--118--9051Chr03:10347014..10347038 (25 bp)
TGCAGATGATCAGGCGCCGGATGCT
LOC_Os03g18490
Target Sequence 
TGAGAATGTGGTTGCTGCTTCTGGTGGTGGCGAGGAGGAAAGGAAAAGGAAGAGAGATGGCAATGGCGGCGGCGGCATCT
TCAGCAAGCTCATGTCCGGCTCGCCGGACTCCTTGCCGGCCTCGGTGGAGGCAGAGGAAAATGAAAGAGAAGGATGCGAC
CAGGGAGGCGAGAAGGCTGGGATTCTGAGCACCGTCGCTTCCAAGATTGGCATCGCCATGTCCGGTGCTGATGGCCGCGA
GAACCACGGCAACGAGGACGATGCTAAGATCAGAAATGGCAACGCTGCTGACCATGGCAAGGCTGAAGAGAAAAGGGATG
AGCCGAATGGCGGTGGAATAGTGAAGCAGATCATGTCAAACCTCCCTGCAGATGATCAGGCGCCGGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis