Browse Element(s) Details


Os.51413.1.S1_at

Description gb:AK062739.1
DB_XREF= gi:32972757
TID=Os.51413.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F01, full insert sequence.
FL= gb:AK062739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0353011/11arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os03g185401/11expressed protein
LOC_Os11g037801/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03540Os.8596.1.S1_at2/1112+1404375..1408357expressed protein
LOC_Os12g03554OsAffx.19470.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03554OsAffx.7473.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51413.1.S1_at--955--6492Chr12:1397740..1397764 (25 bp)
GATATGGGCGGAGCTTGTCAGTAAC
LOC_Os12g03530
Os.51413.1.S1_at--353--4691Chr12:1397747..1397771 (25 bp)
GCGGAGCTTGTCAGTAACAGAAGTA
LOC_Os12g03530
Os.51413.1.S1_at--396--2491Chr12:1397762..1397786 (25 bp)
AACAGAAGTAACTCTCAGTTTGATA
LOC_Os12g03530
Os.51413.1.S1_at--273--3451Chr12:1397777..1397801 (25 bp)
CAGTTTGATAAACATTCCTCATGGA
LOC_Os12g03530
Os.51413.1.S1_at--895--2071Chr12:1397788..1397812 (25 bp)
ACATTCCTCATGGAAGCTGTGAGAA
LOC_Os12g03530
Os.51413.1.S1_at--784--811Chr12:1397817..1397841 (25 bp)
ATGGATGCACTTGACTAAGTTGAAG
LOC_Os12g03530
Os.51413.1.S1_at--367--9852Chr12:1397866..1397890 (25 bp)
TAAATCAGTCCAAATATCAAGCAGT
LOC_Os12g03530
Os.51413.1.S1_at--242--1211Chr12:1397896..1397920 (25 bp)
AGTTTCTTGCACTGCGCACATGTCA
LOC_Os12g03530
Os.51413.1.S1_at--514--8711Chr12:1397916..1397940 (25 bp)
TGTCAAAAAGACACATTGCAGGTTT
LOC_Os12g03530
Os.51413.1.S1_at--487--5631Chr12:1397925..1397949 (25 bp)
GACACATTGCAGGTTTTGCTGTATA
LOC_Os12g03530
Os.51413.1.S1_at--342--8791Chr12:1397963..1397987 (25 bp)
TGTTCACATACATCCAATAGTCAAT
LOC_Os12g03530
Target Sequence 
GATATGGGCGGAGCTTGTCAGTAACAGAAGTAACTCTCAGTTTGATAAACATTCCTCATGGAAGCTGTGAGAAGTGAATG
GATGCACTTGACTAAGTTGAAGATTTGTTATTTACACAAAAATAGATAAATCAGTCCAAATATCAAGCAGTGAATCAGTT
TCTTGCACTGCGCACATGTCAAAAAGACACATTGCAGGTTTTGCTGTATAAGAAATATTCTTATGTTCACATACATCCAA
TAGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis