Browse Element(s) Details


OsAffx.31565.1.S1_at

Description tigr:9639.m00283
TID=OsAffx.31565.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0375011/11pectinesterase inhibitor domain containing protein
LOC_Os12g034901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31565.1.S1_at--795--3872Chr12:1377219..1377243 (25 bp)
CTGTTCTCCTAATTGCTGCGTCTCA
LOC_Os12g03490
OsAffx.31565.1.S1_at--1078--7411Chr11:1471017..1471041 (25 bp)
GTGTACGGCGGGATACTGCAAGTTC
LOC_Os11g03750
OsAffx.31565.1.S1_at--790--9911Chr11:1471004..1471028 (25 bp)
TACTGCAAGTTCAGGCCGCCGTCGG
LOC_Os11g03750
OsAffx.31565.1.S1_at--26--6691Chr11:1470958..1470982 (25 bp)
GTTCCAGGAGGCGATTTCATCGCTG
LOC_Os11g03750
OsAffx.31565.1.S1_at--240--191Chr11:1470945..1470969 (25 bp)
ATTTCATCGCTGGAGAAATCGGCGA
LOC_Os11g03750
OsAffx.31565.1.S1_at--373--1912Chr12:1377627..1377651 (25 bp)
ACGGGTTCGGCAAGAGCAATGTGAC
NONE
OsAffx.31565.1.S1_at--227--5172Chr12:1377636..1377660 (25 bp)
GCAAGAGCAATGTGACGTCGCCGCT
NONE
OsAffx.31565.1.S1_at--984--1891Chr11:1470876..1470900 (25 bp)
ACGTCGCCGCTCTCTGTGGAGAACG
LOC_Os11g03750
OsAffx.31565.1.S1_at--8--4531Chr11:1470871..1470895 (25 bp)
GCCGCTCTCTGTGGAGAACGACGAC
LOC_Os11g03750
OsAffx.31565.1.S1_at--581--5971Chr11:1470858..1470882 (25 bp)
GAGAACGACGACACCTTCCAGCTTG
LOC_Os11g03750
OsAffx.31565.1.S1_at--563--1851Chr11:1470851..1470875 (25 bp)
ACGACACCTTCCAGCTTGCGGAGCT
LOC_Os11g03750
Target Sequence 
CTGTTCTCCTAATTGCTGCGTCTCANCTCGCCGCCGGCANCAACTCGNNCNTGTACGGTGCNTGCAAGACCATCGCCGGC
GGCAGCGNGCTCNTCNGCGTCACGTTCTGCATCGACGCGCTCAGCTCCGACAACCGGAGCAGCAACNTCNGCAGCTACAA
GGANTTCGCGGTGATCGCCGTCGACCTCCTCACGGCCAACGCGACGAGCACCAAGTCNGAGATAGACGNCANGCTCCGGA
NNANCGGCNGCGGCGNCGNCGCNNCGACGCGGTGCCTCNAGTCATGCCAGGCGGTGTACGGCGGGATACTGCAAGTTCAG
GCCGCCGTCGGCGCCGCCGTGAAGGGCGGCAGGTTCCAGGAGGCGATTTCATCGCTGGAGAAATCGGCGAGCGCGGTGAA
GGAGTGCCGGGACGGGTTCGGCAAGAGCAATGTGACGTCGCCGCTCTCTGTGGAGAACGACGACACCTTCCAGCTTGCGG
AGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis