Browse Element(s) Details


Os.8403.1.S1_s_at

Description gb:AK072576.1
DB_XREF= gi:32982599
TID=Os.8403.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.8403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131M13, full insert sequence.
FL= gb:AK061612.1 gb:AK072576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0373011/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g0347011/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed
LOC_Os11g03700OsAffx.19469.2.S1_x_at11/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03700OsAffx.19469.1.S1_x_at7/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8403.1.S1_s_at--264--10492Chr12:1364668..1364692 (25 bp)
TTACAATCACTTCCAGCTACTCTGG
LOC_Os12g03470
Os.8403.1.S1_s_at--790--1572Chr12:1364682..1364706 (25 bp)
AGCTACTCTGGTTCTCTGGCAGCAT
LOC_Os12g03470
Os.8403.1.S1_s_at--786--4972Chr12:1364703..1364727 (25 bp)
GCATCTGCAATTACTTGGCAGGATT
LOC_Os12g03470
Os.8403.1.S1_s_at--360--8272Chr12:1364719..1364743 (25 bp)
GGCAGGATTCTGAAAATAGCTTCTT
LOC_Os12g03470
Os.8403.1.S1_s_at--78--2032Chr12:1364844..1364868 (25 bp)
ACTTTGGGTCTGATCCAGTGAGCCT
LOC_Os12g03470
Os.8403.1.S1_s_at--872--1112Chr12:1364860..1364884 (25 bp)
AGTGAGCCTCACGATCTCTGCAACT
LOC_Os12g03470
Os.8403.1.S1_s_at--358--1892Chr12:1364870..1364894 (25 bp)
ACGATCTCTGCAACTGGGCTTCAGG
LOC_Os12g03470
Os.8403.1.S1_s_at--627--5152Chr12:1364879..1364903 (25 bp)
GCAACTGGGCTTCAGGCCCGTGTTA
LOC_Os12g03470
Os.8403.1.S1_s_at--718--8892Chr12:1364953..1364977 (25 bp)
TGAGAACTCTTTTAGTAACCCGAAT
LOC_Os12g03470
Os.8403.1.S1_s_at--886--1512Chr12:1365125..1365149 (25 bp)
AGCAGAGCAGATGCAAGTCACGCTT
LOC_Os12g03470
Os.8403.1.S1_s_at--380--9172Chr12:1365185..1365209 (25 bp)
TGCCCAGTCCAAACTCGTGGCAGAG
LOC_Os12g03470
Target Sequence 
TTACAATCACTTCCAGCTACTCTGGTTCTCTGGCAGCATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGA
GTAAAGATTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGGCTTCAGGCCCGTGTTAANGCACT
GGGATCAACTGCCACTGTTNTCACATCCAGNAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGGTTGTTCCTG
TCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCG
CTTGCCCAGTCCAAACTCGTGGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis