Browse Element(s) Details


OsAffx.30802.1.S1_at

Description tigr:9639.m00285
TID=OsAffx.30802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0377011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein
LOC_Os11g03810OsAffx.24436.3.S1_at9/1111+1500738..1504746hypothetical protein
LOC_Os11g03810OsAffx.7475.1.S1_at3/1111+1500738..1504746hypothetical protein
LOC_Os11g03820Os.17338.1.S1_at11/1111+1505830..1511513D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30802.1.S1_at--556--2471Chr11:1481498..1481522 (25 bp)
AACACAACGGCTTGCCGGAGGCGTT
LOC_Os11g03770
OsAffx.30802.1.S1_at--99--6392Chr12:1392644..1392668 (25 bp)
GATCGAGGTTTCACAATGGTCTCCT
NONE
OsAffx.30802.1.S1_at--382--9731Chr11:1480884..1480908 (25 bp)
TCAAGTTCAACTCGCCATCAACACT
LOC_Os11g03770
OsAffx.30802.1.S1_at--559--9711Chr11:1480867..1480891 (25 bp)
TCAACACTGACCCTTTCATGTCCGG
LOC_Os11g03770
OsAffx.30802.1.S1_at--723--3511Chr11:1480840..1480864 (25 bp)
CATGCAAGACCGTTGCTGGCAGCAA
LOC_Os11g03770
OsAffx.30802.1.S1_at--60--2591Chr11:1480817..1480841 (25 bp)
AACGGTGGCGTCATCAGTGTCACGT
LOC_Os11g03770
OsAffx.30802.1.S1_at--1152--4591Chr11:1480697..1480721 (25 bp)
GCGACGAGCGCCAATGCCAAGATAG
LOC_Os11g03770
OsAffx.30802.1.S1_at--389--9211Chr11:1480683..1480707 (25 bp)
TGCCAAGATAGACAGCATCCTCAAG
LOC_Os11g03770
OsAffx.30802.1.S1_at--175--871Chr11:1480654..1480678 (25 bp)
ATGGCGGCGGCATGAAACCCGACGA
LOC_Os11g03770
OsAffx.30802.1.S1_at--922--2351Chr11:1480640..1480664 (25 bp)
AAACCCGACGATGCCACAACAGTGA
LOC_Os11g03770
OsAffx.30802.1.S1_at--382--2491Chr11:1480623..1480647 (25 bp)
AACAGTGAGCCTCCAGATGTGCCAG
LOC_Os11g03770
Target Sequence 
AACACAACGGCTTGCCGGAGGCGTTTGGTAGTATGGAGTGTCAGAGGCGCGGCAAGCGCCGCGACGGCTTAGTGGGAGAT
CGATCGAGGTTTCACAATGGTCTCCTCCCATGGCGTCATCAATCCCTCTTCCTCTTCGCCATTGTCCTCGTCGCGGCGTC
TCAAGTTCAACTCGCCATCAACACTGACCCTTTCATGTCCGGCGCATGCAAGACCGTTGCTGGCAGCAACGGTGGCGTCA
TCAGTGTCACGTTCTGCATGGACGCGCTCGGTTCCGACAGCCGGAGCCTCAACGCCAACCACTACAGTGACCTCGCCATC
GTCGCCATCGACCTCCTGACATCCAACGCGACGAGCGCCAATGCCAAGATAGACAGCATCCTCAAGGATGATGGCGGCGG
CATGAAACCCGACGATGCCACAACAGTGAGCCTCCAGATGTGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis