Browse Element(s) Details


Os.8403.1.S1_a_at

Description gb:AK072576.1
DB_XREF= gi:32982599
TID=Os.8403.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.8403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131M13, full insert sequence.
FL= gb:AK061612.1 gb:AK072576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0347011/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g0373011/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed
LOC_Os12g03450Os.49338.1.S1_at11/1112+1345249..1347123pentatricopeptide, putative, expressed
LOC_Os12g03460Os.23141.1.S1_x_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03460Os.23141.1.S1_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8403.1.S1_a_at--342--6652Chr12:1365093..1365117 (25 bp)
GTTGTTCCTGTCAAAAGCCAGCTTT
LOC_Os12g03470
Os.8403.1.S1_a_at--258--8812Chr12:1365095..1365119 (25 bp)
TGTTCCTGTCAAAAGCCAGCTTTCC
LOC_Os12g03470
Os.8403.1.S1_a_at--97--6712Chr12:1365096..1365120 (25 bp)
GTTCCTGTCAAAAGCCAGCTTTCCA
LOC_Os12g03470
Os.8403.1.S1_a_at--559--2432Chr12:1365105..1365129 (25 bp)
AAAAGCCAGCTTTCCAATGCAGCAG
LOC_Os12g03470
Os.8403.1.S1_a_at--926--2652Chr12:1365107..1365131 (25 bp)
AAGCCAGCTTTCCAATGCAGCAGAG
LOC_Os12g03470
Os.8403.1.S1_a_at--490--2452Chr12:1365222..1365246 (25 bp)
AACACAAGGTTAGCGACAGAAACAC
LOC_Os12g03470
Os.8403.1.S1_a_at--637--10452Chr12:1365231..1365255 (25 bp)
TTAGCGACAGAAACACAAGAAATAC
LOC_Os12g03470
Os.8403.1.S1_a_at--352--3412Chr12:1365238..1365262 (25 bp)
CAGAAACACAAGAAATACACGAGAT
LOC_Os12g03470
Os.8403.1.S1_a_at--1159--2152Chr12:1365254..1365278 (25 bp)
ACACGAGATGTGATATGCGAATACC
LOC_Os12g03470
Os.8403.1.S1_a_at--575--6032Chr12:1365258..1365282 (25 bp)
GAGATGTGATATGCGAATACCAGAA
LOC_Os12g03470
Os.8403.1.S1_a_at--647--772Chr12:1365261..1365285 (25 bp)
ATGTGATATGCGAATACCAGAATGC
LOC_Os12g03470
Target Sequence 
GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATT
CGATCTTGCGCTTGCCCAGTCCAAACTCGTGGCAGAGATGTGAAGCAGNAACACAAGGTTAGCGACAGAAACACAAGAAA
TACACGAGATGTGATATGCGAATACCAGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8403.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis