Browse Element(s) Details


OsAffx.7471.1.S1_x_at

Description tigr:9640.m00264
TID=OsAffx.7471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0350011/11expressed protein
LOC_Os11g037602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03540Os.8596.1.S1_at2/1112+1404375..1408357expressed protein
LOC_Os12g03554OsAffx.19470.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03554OsAffx.7473.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7471.1.S1_x_at--1131--7191Chr12:1390037..1390061 (25 bp)
GTCGTCGACAGTTTGTCTCCTTTCT
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--867--7211Chr12:1390034..1390058 (25 bp)
GTCGACAGTTTGTCTCCTTTCTCCC
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--1133--5511Chr12:1387801..1388234 (25 bp)
GAAAAAAAGACACTGCACTATGGCG
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--243--2552Chr12:1387560..1387584 (25 bp)
AACTCTCAGGCATATGGTCTCTTGT
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--300--10692Chr12:1387202..1387547 (25 bp)
TTGCCTTCCTTCCTGATAGTAGACA
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--567--4431Chr12:1387200..1387545 (25 bp)
GCCTTCCTTCCTGATAGTAGACAGA
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--85--3631Chr12:1387198..1387543 (25 bp)
CTTCCTTCCTGATAGTAGACAGACA
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--330--10671Chr12:1387193..1387538 (25 bp)
TTCCTGATAGTAGACAGACATCTCT
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--371--5651Chr12:1387181..1387205 (25 bp)
GACAGACATCTCTACTATTGTATCC
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--720--5671Chr12:1387177..1387201 (25 bp)
GACATCTCTACTATTGTATCCATTT
LOC_Os12g03500
OsAffx.7471.1.S1_x_at--8--10811Chr12:1387164..1387188 (25 bp)
TTGTATCCATTTAGCGAGAAGGATT
LOC_Os12g03500
Target Sequence 
GTCGTCGACAGTTTGTCTCCTTTCTCCCCTTCATCACCGAGGGACATCTCCATCTAGGAAAAAAAGACACTGCACTATGG
CGTCTAGACGCAATGTTCGGGGGTATGCTCCCCTTCCTACAGAGGACAGGGATGACAGCAATCTTACTGATGATGTTGAC
CTTCGGTTCACTTACACCCCAAAATCCCTCAGGAAAATCCCGTGGAAGTCAATTGCCCTGGCACTATTCCTCCTCCTCCT
AGGATGTTCGCTTCTCTTCCTGTCATATTTTATATTCACAGGTCACATGGAGGGGGATAACTCTCAGGCATATGGTCTCT
TGTTCCTGGGCATCCTTGCCTTCCTTCCTGATAGTAGACAGACATCTCTACTATTGTATCCATTTAGCGAGAAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7471.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis