Browse Element(s) Details


Os.8596.1.S1_at

Description gb:AK103286.1
DB_XREF= gi:32988495
TID=Os.8596.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124M23, full insert sequence.
FL= gb:AK103286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0379411/11expressed protein
LOC_Os12g035402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein
LOC_Os11g03810OsAffx.24436.3.S1_at9/1111+1500738..1504746hypothetical protein
LOC_Os11g03810OsAffx.7475.1.S1_at3/1111+1500738..1504746hypothetical protein
LOC_Os11g03820Os.17338.1.S1_at11/1111+1505830..1511513D-mannose binding lectin family protein, expressed
LOC_Os11g03830Os.46785.2.S1_x_at5/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.30226.2.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.442.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830Os.13704.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.21756.3.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8596.1.S1_at--1140--1271Chr11:1491794..1491818 (25 bp)
AGATCTCCACTTGTCTCAGTTTTAC
LOC_Os11g03794
Os.8596.1.S1_at--357--5952Chr12:1404679..1404703 (25 bp)
GAGCAAAGCCACTTGCATTTGCCTT
LOC_Os12g03540
Os.8596.1.S1_at--200--2932Chr12:1404555..1404661 (25 bp)
AAGGACCATTGCTTTCTGTGTGCTG
LOC_Os12g03540
Os.8596.1.S1_at--289--1091Chr11:1491482..1491506 (25 bp)
AGTGGCTGGTGTTGTACGTATCCCC
LOC_Os11g03794
Os.8596.1.S1_at--642--6031Chr11:1491284..1491308 (25 bp)
GAGATGCATTCTCTAGGTGCCTCAA
LOC_Os11g03794
Os.8596.1.S1_at--262--7791Chr11:1491269..1491293 (25 bp)
GGTGCCTCAAAAATGCTGCTATGAT
LOC_Os11g03794
Os.8596.1.S1_at--1161--10791Chr11:1491234..1491258 (25 bp)
TTGTATGTAAAATTCTTCTCTCTGG
LOC_Os11g03794
Os.8596.1.S1_at--125--5591Chr11:1491113..1491137 (25 bp)
GAAATGTATTGTCTGCGCTTGTGTT
LOC_Os11g03794
Os.8596.1.S1_at--395--10831Chr11:1491095..1491119 (25 bp)
TTGTGTTTATGCAGTTCCCCAAAGC
LOC_Os11g03794
Os.8596.1.S1_at--898--31Chr11:1491061..1491085 (25 bp)
ATTGTCTTACCATGTGTCCTTTTAG
LOC_Os11g03794
Os.8596.1.S1_at--965--9911Chr11:1491028..1491052 (25 bp)
TACTGTTCATTAATTGGCTGCACTA
LOC_Os11g03794
Target Sequence 
AGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTT
CCATAGCAAATTTAAGCAAGGACCATTGCTTTCTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTC
GCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATG
CATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTA
TTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGG
AGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTT
AGTGCATGATTACTGTTCATTAATTGGCTGCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis