Browse Element(s) Details


OsAffx.7475.1.S1_at

Description tigr:9640.m00275
TID=OsAffx.7475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0361011/11hypothetical protein
LOC_Os11g038103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03580OsAffx.26199.2.S1_at11/1112+1432889..1435183hypothetical protein
LOC_Os12g03580Os.27362.1.S2_at1/1112+1432889..1435183hypothetical protein
LOC_Os12g03594Os.52665.1.S1_at11/1112+1436032..1444090F-box domain containing protein, expressed
LOC_Os12g03610OsAffx.7475.1.S1_at11/1112+1448383..1449226hypothetical protein
LOC_Os12g03619NANA12+1449724..1450048NA
LOC_Os12g03630Os.57387.1.S1_at11/1112+1451167..1455276expressed protein
LOC_Os12g03630OsAffx.24436.1.S1_at10/1112+1451167..1455276expressed protein
LOC_Os12g03640Os.17338.1.S1_at9/1112+1456297..1458940Protein kinase domain containing protein, expressed
LOC_Os12g03650NANA12+1461306..1463813D-mannose binding lectin family protein
LOC_Os12g03660OsAffx.31566.2.S1_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.2.S1_x_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.1.S1_at4/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.18656.1.S1_at2/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7475.1.S1_at--628--8331Chr12:1448465..1448489 (25 bp)
GGCGGACCCCTTCTAGAAGTAATCT
LOC_Os12g03610
OsAffx.7475.1.S1_at--398--5292Chr12:1448746..1448770 (25 bp)
GAATGGGCCATATCACGGTGCATCG
LOC_Os12g03610
OsAffx.7475.1.S1_at--440--3553Chr12:1448766..1448790 (25 bp)
CATCGGCGTGGCTTCCTATATGGAA
LOC_Os12g03610
OsAffx.7475.1.S1_at--83--7731Chr12:1448797..1448821 (25 bp)
GGTGGGACCCTCTAAATTCTCCAAG
LOC_Os12g03610
OsAffx.7475.1.S1_at--195--2252Chr12:1448810..1448834 (25 bp)
AAATTCTCCAAGAGCTACCTCGCCA
LOC_Os12g03610
OsAffx.7475.1.S1_at--1062--533Chr12:1448834..1448858 (25 bp)
ATCGCCAGTCCAACAGTCAGGGAAT
LOC_Os12g03610
OsAffx.7475.1.S1_at--754--5211Chr12:1448855..1448879 (25 bp)
GAATTTACGCCAATCCCAAGCAAAG
LOC_Os12g03610
OsAffx.7475.1.S1_at--880--1491Chr12:1448873..1448897 (25 bp)
AGCAAAGATCCACCCAACATTGACA
LOC_Os12g03610
OsAffx.7475.1.S1_at--817--2511Chr12:1448888..1448912 (25 bp)
AACATTGACAACCAAATTGCTCTCG
LOC_Os12g03610
OsAffx.7475.1.S1_at--305--3171Chr12:1448902..1448922 (21 bp)
AATTGCTCTCGAAATCGCCGTTTAC
LOC_Os12g03610
OsAffx.7475.1.S1_at--603--4431Chr12:1449134..1449155 (22 bp)
GCCGTTTACCCTCAATTTGTTGGTG
LOC_Os12g03610
Target Sequence 
GGCGGACCCCTTCTAGAAGTAATCTAGAAATTGCAGCGGCATATGGAGTGAATGGGCCATATCACGGTGCATCGGCGTGG
CTTCCTATATGGAAAGTTGGGGTGGGACCCTCTAAATTCTCCAAGAGCTACCTCGCCATCGCCAGTCCAACAGTCAGGGA
ATTTACGCCAATCCCAAGCAAAGATCCACCCAACATTGACAACCAAATTGCTCTCGAAATCGCCGTTTACCCTCAATTTG
TTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis