Browse Element(s) Details


Os.57387.1.S1_at

Description gb:AK111431.1
DB_XREF= gi:32996640
TID=Os.57387.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H08, full insert sequence.
FL= gb:AK111431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0363011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03580OsAffx.26199.2.S1_at11/1112+1432889..1435183hypothetical protein
LOC_Os12g03580Os.27362.1.S2_at1/1112+1432889..1435183hypothetical protein
LOC_Os12g03594Os.52665.1.S1_at11/1112+1436032..1444090F-box domain containing protein, expressed
LOC_Os12g03610OsAffx.7475.1.S1_at11/1112+1448383..1449226hypothetical protein
LOC_Os12g03619NANA12+1449724..1450048NA
LOC_Os12g03630Os.57387.1.S1_at11/1112+1451167..1455276expressed protein
LOC_Os12g03630OsAffx.24436.1.S1_at10/1112+1451167..1455276expressed protein
LOC_Os12g03640Os.17338.1.S1_at9/1112+1456297..1458940Protein kinase domain containing protein, expressed
LOC_Os12g03650NANA12+1461306..1463813D-mannose binding lectin family protein
LOC_Os12g03660OsAffx.31566.2.S1_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.2.S1_x_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.1.S1_at4/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.18656.1.S1_at2/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57387.1.S1_at--1153--1911Chr12:1454087..1454111 (25 bp)
ACGGATGGTCCAATTCAGTTAGTTG
LOC_Os12g03630
Os.57387.1.S1_at--759--3311Chr12:1454150..1454174 (25 bp)
CACATGTGGCAGACAGATTCCGGAT
LOC_Os12g03630
Os.57387.1.S1_at--169--3971Chr12:1454170..1454194 (25 bp)
CGGATGCCTTGTCGGAAGCTCAAAG
LOC_Os12g03630
Os.57387.1.S1_at--733--5571Chr12:1454336..1454360 (25 bp)
GAAAGTCAGCTGTCCTGAGGGCCTA
LOC_Os12g03630
Os.57387.1.S1_at--810--7551Chr12:1454354..1454378 (25 bp)
GGGCCTACTCTGCACCCAGGGAAGA
LOC_Os12g03630
Os.57387.1.S1_at--605--6331Chr12:1454382..1454406 (25 bp)
GATGCATCACGGTGCTTAGCAGCTA
LOC_Os12g03630
Os.57387.1.S1_at--160--8911Chr12:1454424..1454448 (25 bp)
TGAGCAGAATCAGTTGTCAACCTTG
LOC_Os12g03630
Os.57387.1.S1_at--933--9711Chr12:1454440..1454464 (25 bp)
TCAACCTTGGTTCCTGTTCGACAGA
LOC_Os12g03630
Os.57387.1.S1_at--1115--9911Chr12:1454479..1454503 (25 bp)
TACGGTACTCCACTGATTTATTTTC
LOC_Os12g03630
Os.57387.1.S1_at--939--6331Chr12:1454545..1454569 (25 bp)
GATGCTTTGAACTGGTCTATCATAA
LOC_Os12g03630
Os.57387.1.S1_at--87--3271Chr12:1454596..1454620 (25 bp)
CAACTAGTGTATTGCTCTCGATCCC
LOC_Os12g03630
Target Sequence 
ACGGATGGTCCAATTCAGTTAGTTGAGGAGCACAATCAAGAAAGCAGTAATGTGTCATAGAATCACATGTGGCAGACAGA
TTCCGGATGCCTTGTCGGAAGCTCAAAGTGACATTTATCAAAGAATTAGCTATTTTAATCTCTGACATTGTTTATGGGCT
TATGGGAGTACAATGTTGATAATGGTATGAACTTGAGACGTCGGTGGTGGAGCATCATCGGTTGAGGAATGTACTGATGT
GCAAGCTAAGAAAGTCAGCTGTCCTGAGGGCCTACTCTGCACCCAGGGAAGAATGGATGCATCACGGTGCTTAGCAGCTA
ACAAAGGAAGATGCGCTTGAGCAGAATCAGTTGTCAACCTTGGTTCCTGTTCGACAGATCTACTATTATTTTTACGGTAC
TCCACTGATTTATTTTCACTGAAGAGATAGGTCCAATGAAGATTTAAGGGCAGTCATTGATGCTTTGAACTGGTCTATCA
TAAATGTTGAAACAGAACTCACGAGTGTTCAACTAGTGTATTGCTCTCGATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis