Browse Element(s) Details


OsAffx.7470.2.S1_at

Description tigr:9640.m00262
TID=OsAffx.7470.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g034803/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed
LOC_Os12g03450Os.49338.1.S1_at11/1112+1345249..1347123pentatricopeptide, putative, expressed
LOC_Os12g03460Os.23141.1.S1_x_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03460Os.23141.1.S1_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7470.2.S1_at--349--5351Chr12:1373713..1373737 (25 bp)
GAAGAGGGTAACTTCTCCATTACAA
LOC_Os12g03480
OsAffx.7470.2.S1_at--1158--3271Chr12:1373735..1373759 (25 bp)
CAAAAATCTGGTCTGTTACAATTAG
LOC_Os12g03480
OsAffx.7470.2.S1_at--644--10411Chr12:1373750..1373770 (21 bp)
TTACAATTAGACATGCAGGTGTGGC
LOC_Os12g03480
OsAffx.7470.2.S1_at--759--8133Chr12:1375222..1375246 (25 bp)
GGACAGCTCCATCTTACTTGCACAC
NONE
OsAffx.7470.2.S1_at--114--10492Chr12:1375235..1375259 (25 bp)
TTACTTGCACACTCATTCAGAAACA
NONE
OsAffx.7470.2.S1_at--53--2212Chr12:1375257..1375281 (25 bp)
ACAAACATTGATTCATTCCGCCAGC
NONE
OsAffx.7470.2.S1_at--572--91Chr12:1375271..1375295 (25 bp)
ATTCCGCCAGCACTACACTGGAGCT
NONE
OsAffx.7470.2.S1_at--1135--2172Chr12:1375285..1375309 (25 bp)
ACACTGGAGCTGAAGAGCGCGCCGC
NONE
OsAffx.7470.2.S1_at--1142--4152Chr12:1375307..1375331 (25 bp)
CGCCATGCCAATTCGGAGCCAGAAA
NONE
OsAffx.7470.2.S1_at--428--1391Chr12:1375365..1375389 (25 bp)
AGACACGGCCGTGAGCCACCGGTTG
NONE
OsAffx.7470.2.S1_at--122--8051Chr12:1375397..1375421 (25 bp)
GGAGATCGAGGCATTGAGCAAGTCC
NONE
Target Sequence 
GAAGAGGGTAACTTCTCCATTACAAAAATCTGGTCTGTTACAATTAGACATGCAGGTGTGGCAAAATGGACAGCTCCATC
TTACTTGCACACTCATTCAGAAACAAACATTGATTCATTCCGCCAGCACTACACTGGAGCTGAAGAGCGCGCCGCCATGC
CAATTCGGAGCCAGAAAAGAGCACGCCGCCGCCGCGCCATGCCGCTCCGGAGACACGGCCGTGAGCCACCGGTTGCGAGG
GTGGAGATCGAGGCATTGAGCAAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7470.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis