Browse Element(s) Details


Os.23141.1.S1_at

Description gb:AK120379.1
DB_XREF= gi:37990002
TID=Os.23141.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072B16, full insert sequence.
FL= gb:AK120379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0346010/11small zinc finger, putative, expressed
LOC_Os11g0371010/11small zinc finger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed
LOC_Os12g03450Os.49338.1.S1_at11/1112+1345249..1347123pentatricopeptide, putative, expressed
LOC_Os12g03460Os.23141.1.S1_x_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03460Os.23141.1.S1_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23141.1.S1_at--172--5132Chr12:1354241..1354265 (25 bp)
GCAACGAGTTAGCAGCCCTAGGTGA
LOC_Os12g03460
Os.23141.1.S1_at--547--2572Chr12:1354239..1354263 (25 bp)
AACGAGTTAGCAGCCCTAGGTGAAA
LOC_Os12g03460
Os.23141.1.S1_at--146--6072Chr12:1354236..1354260 (25 bp)
GAGTTAGCAGCCCTAGGTGAAAATT
LOC_Os12g03460
Os.23141.1.S1_at--201--5052Chr12:1354230..1354254 (25 bp)
GCAGCCCTAGGTGAAAATTCGCATA
LOC_Os12g03460
Os.23141.1.S1_at--567--10072Chr12:1354223..1354247 (25 bp)
TAGGTGAAAATTCGCATAGGTCTTT
LOC_Os12g03460
Os.23141.1.S1_at--659--6792Chr12:1354112..1354136 (25 bp)
GTTTTGGTGTTTTTCCTGCTATACG
LOC_Os12g03460
Os.23141.1.S1_at--821--10852Chr12:1354109..1354133 (25 bp)
TTGGTGTTTTTCCTGCTATACGTTC
LOC_Os12g03460
Os.23141.1.S1_at--551--4112Chr12:1354041..1354065 (25 bp)
CGCTACTGTACTTTGACTACTTTTG
LOC_Os12g03460
Os.23141.1.S1_at--244--3872Chr12:1354036..1354060 (25 bp)
CTGTACTTTGACTACTTTTGACCTG
LOC_Os12g03460
Os.23141.1.S1_at--615--9892Chr12:1354033..1354057 (25 bp)
TACTTTGACTACTTTTGACCTGAAA
LOC_Os12g03460
Os.23141.1.S1_at--102--2991Chr12:1353974..1353998 (25 bp)
AATGTGTTAATGAAGTGTCTGTGTC
NONE
Target Sequence 
GCAACGAGTTAGCAGCCCTAGGTGAAAATTCGCATAGGTCTTTNCTGCGTCGAGAATGTAGAATCTANNATAGTTGATGC
TAGAAACTANACCTAAGNGGCATCACTTGCTTTTTGCTNCATTTTNTCAGTTTTGGTGTTTTTCCTGCTATACGTTCNNA
GTGAAANGATTGCAAGTTTTGCTCTTGCAAGGAGATTAAAANCGCTACTGTACTTTGACTACTTTTGACCTGAAAANAAT
CAGAGACAAGCTCATAGNCTGGAGCAGNAAATGTGTTAATGAAGTGTCTGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis