Browse Element(s) Details


OsAffx.19468.1.S1_at

Description tigr:9640.m00256
TID=OsAffx.19468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT001037 At5g19750T29J13_170
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g034309/11Mpv17/PMP22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed
LOC_Os12g03450Os.49338.1.S1_at11/1112+1345249..1347123pentatricopeptide, putative, expressed
LOC_Os12g03460Os.23141.1.S1_x_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03460Os.23141.1.S1_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19468.1.S1_at--1067--3271NONE
CAAAAATTTCAGCTTGACTTCCCCA
NONE
OsAffx.19468.1.S1_at--569--2231NONE
AAATTTCAGCTTGACTTCCCCAAAG
NONE
OsAffx.19468.1.S1_at--518--10331Chr12:1335963..1335983 (21 bp)
TTTCAGCTTGACTTCCCCAAAGCCA
LOC_Os12g03430
OsAffx.19468.1.S1_at--186--3292Chr12:1335946..1335970 (25 bp)
CAAAGCCACACAAACCACCTTTTTG
LOC_Os12g03430
OsAffx.19468.1.S1_at--1059--10771Chr12:1335897..1335921 (25 bp)
TTGATTGGTGCTAAAGGTGCCGTTT
LOC_Os12g03430
OsAffx.19468.1.S1_at--764--7651Chr12:1335891..1335915 (25 bp)
GGTGCTAAAGGTGCCGTTTGTTCTT
LOC_Os12g03430
OsAffx.19468.1.S1_at--76--7291Chr12:1335881..1335905 (25 bp)
GTGCCGTTTGTTCTTTTGTTACTCA
LOC_Os12g03430
OsAffx.19468.1.S1_at--24--4511Chr12:1335879..1335903 (25 bp)
GCCGTTTGTTCTTTTGTTACTCATG
LOC_Os12g03430
OsAffx.19468.1.S1_at--885--6851Chr12:1335876..1335900 (25 bp)
GTTTGTTCTTTTGTTACTCATGAGG
LOC_Os12g03430
OsAffx.19468.1.S1_at--207--6731Chr12:1335872..1335896 (25 bp)
GTTCTTTTGTTACTCATGAGGAACA
LOC_Os12g03430
OsAffx.19468.1.S1_at--143--8872Chr12:1335856..1335880 (25 bp)
TGAGGAACAACCAGTAGTGTCTCTG
LOC_Os12g03430
Target Sequence 
CAAAAATTTCAGCTTGACTTCCCCAAAGCCACACAAACCACCTTTTTGTACCTTTTGCAATTTAAAATGATGTTGATTGG
TGCTAAAGGTGCCGTTTGTTCTTTTGTTACTCATGAGGAACAACCAGTAGTGTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis