Browse Element(s) Details


OsAffx.31564.2.S1_at

Description tigr:9640.m00252
TID=OsAffx.31564.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0339011/11F-box domain containing protein, expressed
LOC_Os11g036109/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03330OsAffx.31563.1.S1_at11/1112+1290584..1290910hypothetical protein
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein
LOC_Os12g03350Os.50919.1.S1_at4/1112+1301340..1302288hypothetical protein
LOC_Os12g03360Os.50942.1.S1_at6/1112+1304139..1305879Nse1 non-SMC component of SMC5-6 complex family protein
LOC_Os12g03370Os.50598.1.S1_at11/1112+1308547..1309703Harpin-induced protein 1 containing protein, expressed
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31564.2.S1_at--704--9732Chr12:1315312..1315336 (25 bp)
TCAATGGCTGGGTTGCGTTTGCTAT
LOC_Os12g03390
OsAffx.31564.2.S1_at--429--2892Chr12:1315275..1315299 (25 bp)
AAGGGTTATCATTCTTGACTTCTCC
LOC_Os12g03390
OsAffx.31564.2.S1_at--184--10752Chr12:1315261..1315285 (25 bp)
TTGACTTCTCCCCAGATTGGAAATC
LOC_Os12g03390
OsAffx.31564.2.S1_at--1100--5672Chr12:1315220..1315244 (25 bp)
GACTTTCCTTGTCATATTTTCGACA
LOC_Os12g03390
OsAffx.31564.2.S1_at--1084--352Chr12:1315192..1315216 (25 bp)
ATAATGGATCTTACCTTGAGGCTCT
LOC_Os12g03390
OsAffx.31564.2.S1_at--950--912Chr12:1315174..1315198 (25 bp)
AGGCTCTTCGGCTTGACAGTGTTAC
LOC_Os12g03390
OsAffx.31564.2.S1_at--336--7432Chr12:1315156..1315180 (25 bp)
GTGTTACTTTGAATCCACCTCTAGA
LOC_Os12g03390
OsAffx.31564.2.S1_at--486--4352Chr12:1315142..1315166 (25 bp)
CCACCTCTAGATTTCTGCGGATTTG
LOC_Os12g03390
OsAffx.31564.2.S1_at--708--2632Chr12:1315115..1315139 (25 bp)
AACCTTAAACTGCTTGCTCTTGACA
LOC_Os12g03390
OsAffx.31564.2.S1_at--794--8651Chr12:1314996..1315020 (25 bp)
TGTGTCGGAACCATTATGCCGTCTG
LOC_Os12g03390
OsAffx.31564.2.S1_at--1151--591Chr12:1314981..1315005 (25 bp)
ATGCCGTCTGCAATGTTTGTCAATT
LOC_Os12g03390
Target Sequence 
TCAATGGCTGGGTTGCGTTTGCTATTGCATCAAAGGCAAGGGTTATCATTCTTGACTTCTCCCCAGATTGGAAATCACAT
GAAAACAACTATGACTTTCCTTGTCATATTTTCGACAAACATAATGGATCTTACCTTGAGGCTCTTCGGCTTGACAGTGT
TACTTTGAATCCACCTCTAGATTTCTGCGGATTTGCAAACCTTAAACTGCTTGCTCTTGACAATGTTAGGTTGCAACATT
TAGAGCAGTTAATATCGAAATGCCATGTTCTAGAGTGGTTAAGCATCCAATCATGTAACCAGCTGCATAATTTACATGTG
TCGGAACCATTATGCCGTCTGCAATGTTTGTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31564.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis