Browse Element(s) Details


Os.50919.1.S1_at

Description gb:AK059458.1
DB_XREF= gi:32969476
TID=Os.50919.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-C06, full insert sequence.
FL= gb:AK059458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0358011/11expressed protein
LOC_Os12g033504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed
LOC_Os11g03550OsAffx.31562.2.S1_s_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03550OsAffx.31562.1.S1_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed
LOC_Os11g03610OsAffx.31564.1.S1_at11/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03610OsAffx.31564.2.S1_at9/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50919.1.S1_at--340--8212Chr12:1301691..1301715 (25 bp)
GGAAGGCCTCTGCAAGCTCCGCAAG
LOC_Os12g03350
Os.50919.1.S1_at--1090--8411Chr11:1389906..1389930 (25 bp)
GGCCAGAAGCTCTACCGGCTTGAAA
LOC_Os11g03580
Os.50919.1.S1_at--829--8471Chr11:1389859..1389883 (25 bp)
TGGCGTTCCAACTATAATCTTCTCT
LOC_Os11g03580
Os.50919.1.S1_at--794--10172Chr12:1301421..1301444 (24 bp)
TATAATCTTCTCTGCTTCTTCACGA
LOC_Os12g03350
Os.50919.1.S1_at--797--3652Chr12:1301407..1301431 (25 bp)
CTTCTTCACGACTCGTCAGGGTGAA
LOC_Os12g03350
Os.50919.1.S1_at--1006--9632Chr12:1301392..1301416 (25 bp)
TCAGGGTGAAGCTCCCCACATTGAG
LOC_Os12g03350
Os.50919.1.S1_at--647--2071Chr11:1389801..1389825 (25 bp)
ACATTGAGCGCCACGGAGCATCATC
LOC_Os11g03580
Os.50919.1.S1_at--6--5931Chr11:1389786..1389810 (25 bp)
GAGCATCATCTAGCAGCGCTTCAAT
LOC_Os11g03580
Os.50919.1.S1_at--624--2431Chr11:1389721..1389745 (25 bp)
AAAATGTTTAGCTCTTCCGATCCGT
LOC_Os11g03580
Os.50919.1.S1_at--851--9571Chr11:1389709..1389733 (25 bp)
TCTTCCGATCCGTTTGAACCAAATT
LOC_Os11g03580
Os.50919.1.S1_at--528--3131Chr11:1389607..1389631 (25 bp)
AATTTTTCTCTGCACATACTCTTAT
LOC_Os11g03580
Target Sequence 
GGAAGGCCTCTGCAAGCTCCGCAAGCTGCGTCTCGACGACGACACCACGAGCCCATTCTCTCGGTTCCAGGAGGAGGTCG
CCGCGGCGCTCAACTTCATCTACCGCACACAGAAGGAGCTCGCGGCGTGCACCGACGATCTCTGCCTCACCATGGATGGC
TCCGCGACCTCCTACCAGCTGCTTGGCAACTTCGCCGCTGGCCAGAAGCTCTACCGGCTTGAAACAACAACCAGTGCAGA
TGGAGATGGCGTTCCAACTATAATCTTCTCTGCTTCTTCACGACTCGTCAGGGTGAAGCTCCCCACATTGAGCGCCACGG
AGCATCATCTAGCAGCGCTTCAATGTACAAGCGAGTATATTTAGTTTCTTTTTTTTTCCCTGATAAAATGTTTAGCTCTT
CCGATCCGTTTGAACCAAATTGTAGTTTTCTGTACTTGGGAAACGAGGAATGGAGTCAAATGGATTATAGTACCATTGGT
TTCCTTTTCTTTCCCTTCAATTTTTCTCTGCACATACTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis