Browse Element(s) Details


Os.16683.1.S1_at

Description gb:AK112088.1
DB_XREF= gi:37988751
TID=Os.16683.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A07, full insert sequence.
FL= gb:AK112088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g032908/11AP2 domain containing protein, expressed
LOC_Os11g035402/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03250Os.46500.2.S1_at1/1112+1241368..1245665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03250Os.46500.1.S1_at1/1112+1241368..1245665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03260Os.52496.1.S1_at11/1112+1250285..1255039MATE efflux family protein, expressed
LOC_Os12g03280NANA12+1263680..1264642hypothetical protein
LOC_Os12g03270Os.5915.1.S1_at11/1112+1264350..1268139Protein of unknown function, DUF609 containing protein, expressed
LOC_Os12g03290Os.16683.1.S1_at8/1112+1268565..1273766AP2 domain containing protein, expressed
LOC_Os12g03304NANA12+1275104..1279591retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03320OsAffx.31562.2.S1_s_at11/1112+1283830..1285605hypothetical protein
LOC_Os12g03330OsAffx.31563.1.S1_at11/1112+1290584..1290910hypothetical protein
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006109biological_processregulation of carbohydrate metabolism
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0008610biological_processlipid biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0009887biological_processorgan morphogenesis
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16683.1.S1_at--336--4592Chr12:1268843..1268867 (25 bp)
GCGAATATCTCCTCAAGCAAACAAT
LOC_Os12g03290
Os.16683.1.S1_at--1067--2232Chr12:1268823..1268847 (25 bp)
ACAATATCTCCTGCCCTCAAAAAAT
LOC_Os12g03290
Os.16683.1.S1_at--223--1112Chr12:1268794..1268818 (25 bp)
AGTGTGTGCAACTGATTCTCTCTGT
LOC_Os12g03290
Os.16683.1.S1_at--14--7871Chr11:1363605..1363629 (25 bp)
GGTATATTTCTCTGTCCAATGGCAC
NONE
Os.16683.1.S1_at--756--2352Chr12:1268666..1268690 (25 bp)
AAAGCTTCTGTAGGCGTTCTGTTCA
LOC_Os12g03290
Os.16683.1.S1_at--148--272Chr12:1268627..1268651 (25 bp)
ATATGCTTCTCCCTATGGTCCTAGT
LOC_Os12g03290
Os.16683.1.S1_at--1043--8572Chr12:1268612..1268636 (25 bp)
TGGTCCTAGTCTCCTAGAAACCCAA
LOC_Os12g03290
Os.16683.1.S1_at--995--2932Chr12:1268588..1268612 (25 bp)
AAGGCATTCAACTTGGCATGAGACA
LOC_Os12g03290
Os.16683.1.S1_at--1010--5972Chr12:1268569..1268593 (25 bp)
GAGACAAGTGTCTGTGTTCCTTTTC
LOC_Os12g03290
Os.16683.1.S1_at--347--8512Chr12:1268558..1268581 (24 bp)
TGTGTTCCTTTTCTTGTAATACCCA
NONE
Os.16683.1.S1_at--1083--6932Chr12:1268441..1268465 (25 bp)
GTAGTACTATAGGTATTCCCACAAG
NONE
Target Sequence 
GCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGT
GTTTCTGGGTGTTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGG
CACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGANTTCATATGCTTCTCCCTATGGTCCTA
GTCTCCTAGAAACCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTG
ATTGATTAACTAGGGAGACAATTTTCTCCCTTACCCTAGNTTGAGCTAGTTAATTCTGATTACTCAGAATCTTGAATGCT
TGAGTAGTACTATAGGTATTCCCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis