Browse Element(s) Details


Os.5915.1.S1_at

Description gb:AK099983.1
DB_XREF= gi:32985192
TID=Os.5915.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129J01, full insert sequence.
FL= gb:AK099983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0353011/11phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os12g0327011/11Protein of unknown function, DUF609 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03484OsAffx.7468.1.S1_at11/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03484Os.11241.1.S1_at8/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03500Os.52496.1.S1_at2/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03500Os.11241.1.S1_at1/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03510Os.23290.2.S1_s_at11/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03510OsAffx.30797.1.S1_at9/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03520Os.55334.1.S1_at11/1111+1358246..1359545GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g03530Os.5915.1.S1_at11/1111+1359727..1363128phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed
LOC_Os11g03550OsAffx.31562.2.S1_s_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03550OsAffx.31562.1.S1_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5915.1.S1_at--605--9952Chr12:1267325..1267447 (25 bp)
TACCCAGATTCCTTTCACAGTTTAT
LOC_Os12g03270
Os.5915.1.S1_at--353--8652Chr12:1267681..1267705 (25 bp)
TGGGCACAAAAGTCAGTTCTCAATT
LOC_Os12g03270
Os.5915.1.S1_at--762--6232Chr12:1267730..1267754 (25 bp)
GATGGCTTTTGATAACCTTTTCTGT
LOC_Os12g03270
Os.5915.1.S1_at--350--6932Chr12:1267753..1267777 (25 bp)
GTATGGCCTTTCAGATGCTTGACGC
LOC_Os12g03270
Os.5915.1.S1_at--555--632Chr12:1267767..1267791 (25 bp)
ATGCTTGACGCTCAGTGGCTCACAA
LOC_Os12g03270
Os.5915.1.S1_at--1077--6152Chr12:1267903..1267927 (25 bp)
GAGGTTCTAAAGTCCATGCGTATTC
LOC_Os12g03270
Os.5915.1.S1_at--612--8052Chr12:1267971..1267995 (25 bp)
GGAGATGCCATCATTTAGGTTGCTA
LOC_Os12g03270
Os.5915.1.S1_at--693--2912Chr12:1268025..1268049 (25 bp)
AAGGAGTGTATCTTACTTGTCAGTA
LOC_Os12g03270
Os.5915.1.S1_at--282--2072Chr12:1268039..1268063 (25 bp)
ACTTGTCAGTAGGATCTTGTGCATA
LOC_Os12g03270
Os.5915.1.S1_at--660--7332Chr12:1268057..1268081 (25 bp)
GTGCATACTACCGATTCTTTCATTG
LOC_Os12g03270
Os.5915.1.S1_at--599--10752Chr12:1268079..1268103 (25 bp)
TTGGTTGTACAACATGACACACTGT
LOC_Os12g03270
Target Sequence 
TACCCAGATTCCTTTCACAGTTTATTACACAAGNCGGATGNTAAGAGATCTGAATGGGAATATCCCTTTNCANTANCTGG
CNTGAACATATCTTATATGTTAGTGCAAATGTTGGANCTGCAATCAGGAAAAATGGGCACAAAAGTCAGTTCTCAATTTG
TTCAACTACTTAGAGAAGACGAGATGGCTTTTGATAACCTTTTCTGTATGGCCTTTCAGATGCTTGACGCTCAGTGGCTC
ACAAGACAAGCTAGTTATATGGAATTCAATGAGGTTCTAAAGTCCATGCGTATTCAGTTAGAACAAGAACTTACTATCGG
AAGCATTTCTTGTGTTCAGGAGATGCCATCATTTAGGTTGCTAAAAAGGTAGCCATGTTTGTTGTTTACAGAAAGGAGTG
TATCTTACTTGTCAGTAGGATCTTGTGCATACTACCGATTCTTTCATTGGTTGTACAACATGACACACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis