Browse Element(s) Details


OsAffx.7468.1.S1_at

Description tigr:9640.m00234
TID=OsAffx.7468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CDS
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0348411/11MatE family protein, expressed
LOC_Os12g0324011/11hypothetical protein
LOC_Os11g032406/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03440Os.3389.2.S1_at4/1111+1316545..1317682Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g03450Os.53881.1.S1_s_at1/1111+1323620..1324078hypothetical protein
LOC_Os11g03460Os.28138.1.S1_at1/1111+1325006..1327927expressed protein
LOC_Os11g03470Os.9497.1.S1_at10/1111+1328443..1332416homoserine dehydrogenase family protein, expressed
LOC_Os11g03484OsAffx.7468.1.S1_at11/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03484Os.11241.1.S1_at8/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03500Os.52496.1.S1_at2/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03500Os.11241.1.S1_at1/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03510Os.23290.2.S1_s_at11/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03510OsAffx.30797.1.S1_at9/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03520Os.55334.1.S1_at11/1111+1358246..1359545GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g03530Os.5915.1.S1_at11/1111+1359727..1363128phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7468.1.S1_at--979--1632Chr12:1238182..1238206 (25 bp)
AGCCTAAGCCGGCTACCTACAAGCA
LOC_Os12g03240
OsAffx.7468.1.S1_at--390--9792Chr12:1238178..1238202 (25 bp)
TAAGCCGGCTACCTACAAGCATCAG
LOC_Os12g03240
OsAffx.7468.1.S1_at--1043--4472Chr12:1238175..1238199 (25 bp)
GCCGGCTACCTACAAGCATCAGGAA
LOC_Os12g03240
OsAffx.7468.1.S1_at--673--8312Chr12:1238172..1238196 (25 bp)
GGCTACCTACAAGCATCAGGAAGAT
LOC_Os12g03240
OsAffx.7468.1.S1_at--561--9972Chr12:1238169..1238193 (25 bp)
TACCTACAAGCATCAGGAAGATGAT
LOC_Os12g03240
OsAffx.7468.1.S1_at--1121--1473Chr11:1185519..1185584 (25 bp)
AGCAATGGCATCCTGAGTTATCATT
LOC_Os11g03240
OsAffx.7468.1.S1_at--982--853Chr11:1185523..1185588 (25 bp)
ATGGCATCCTGAGTTATCATTACAC
LOC_Os11g03240
OsAffx.7468.1.S1_at--777--8273Chr11:1185525..1185590 (25 bp)
GGCATCCTGAGTTATCATTACACAG
LOC_Os11g03240
OsAffx.7468.1.S1_at--878--8893Chr11:1185574..1185597 (24 bp)
TGAGTTATCATTACACAGTTTTGGG
LOC_Os11g03240
OsAffx.7468.1.S1_at--876--153Chr11:1185606..1185630 (25 bp)
ATTATTACTACGTTGTAACAATTCA
LOC_Os11g03240
OsAffx.7468.1.S1_at--776--9853Chr11:1185611..1185635 (25 bp)
TACTACGTTGTAACAATTCAAATTG
LOC_Os11g03240
Target Sequence 
AGCCTAAGCCGGCTACCTACAAGCATCAGGAAGATGATGATGCAGAGGAGGATGAGGTTGGATCGGTGAGGCGGCGAGTG
GTGGAGGAGAACAAGAAGCTGTGGGTGGTGGCGGGTCCTTCCATCTGCGCCCGCTTCTCCTCCTTCGGCGTCACCGTCAT
CAGCCAGGCGTTCATCGGACACATCGGCGCCACCGAGCTCGCCGCCTACGCCCTCGTCTCCACCGTCCTCATGCGCTTCA
GCAATGGCATCCTGAGTTATCATTACACAGTTTTGGGTTTAAATTATTATTACTACGTTGTAACAATTCAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis